Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq10290 134 1e-26 seq9943 129 6e-25 seq11381 104 2e-17 seq14790 96.9 4e-15 seq16311 84.2 2e-11 >seq10290 Length=4455921 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || ||||| ||||| ||||||||||||||| | || || || || Sbjct 2170706 AATATGCAGATCTTTGTGAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTGGAGCCC 2170765 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | || ||| | | |||| || |||| ||||| || ||||| ||| | || Sbjct 2170766 AGCGACACGATTGAAAATG-TTAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGA 2170824 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| | | |||| || ||||| ||||| || || | ||||||||| ||||| Sbjct 2170825 TCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGACTA 2170884 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| || |||| || ||||| || |||| |||| || || Sbjct 2170885 CAACATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2170935 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| |||||||| || ||| | || || || ||| Sbjct 2172856 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACTATTACCCTTGAGGTTGAGCCCAGT 2172915 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | || | || |||| ||||| || ||||| ||| | || || Sbjct 2172916 GACACCATTGAAAACG-TGAAAGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCA 2172974 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | || ||||| ||||| || || | ||| |||||| ||||||||| Sbjct 2172975 ACAAAGGCTTATTTTTGCTGGCAAGCAGCTTGAGGATGGGCGTACCCTCTCCGACTACAA 2173034 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || |||| || || |||| ||||| | || || || Sbjct 2173035 CATCCAGAAAGAATCCACTCTTCACTTAGTCCTGCGCCTCAGAGGTGG 2173082 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| || || |||||||| | || || || ||| | Sbjct 2170937 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTTTGGAGGTGGAGCCCAGC 2170996 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || |||| ||||| || ||||| ||| | || ||| Sbjct 2170997 GACACCATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 2171056 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | || ||||| ||||| || |||| ||||| || ||||||||| Sbjct 2171057 CAGAGGCTGATTTTTGCCGGCAAGCAGCTCGAAGACGGCCGCACTCTGTCTGACTACAAC 2171116 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| || |||| || ||||| || |||| |||| || || Sbjct 2171117 ATTCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2171163 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| || || |||||||| | || || || ||| Sbjct 2173084 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 2173143 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 2173144 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 2173202 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || || ||||| || |||| || || || |||||||| Sbjct 2173203 GCAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGTACTCTGTCTGACTACAA 2173262 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| || |||| || ||||| || | || | ||||| ||| Sbjct 2173263 CATCCAGAAAGAATCCACCCTTCATCTTGTTCTTCGTCTCAGGGGTGGC 2173311 >seq9943 Length=499256 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| ||||||| ||||| || |||||||| ||||||| || || |||||| Sbjct 291943 GGGGAGCGTGTGGTGGCGTTCGCCGCTGTCGAGGGGATCTTCTTCTCTGGATCCTTCGCC 292002 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || |||||||||||||| ||||| |||||||| ||||| ||| |||||| ||| Sbjct 292003 GCCATTTTCTGGCTCAAGAAACGAGGCCTGATGCCCGGACTGACCTTCTCCAACGAACTC 292062 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 292063 ATCAGCAGAGACGAGG 292078 Score = 105 bits (116), Expect = 7e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||||| || ||||| || || ||||| || |||||||| || |||| ||| Sbjct 290189 GAGCCTCTGCTGAAGGAAAACCCACGACGCTTCGTCATCTTCCCCATTCACTACCACGAC 290248 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || ||| ||||||||| ||||||||||| || |||||||||| |||||||| Sbjct 290249 ATCTGGACCATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCAGAGGAGGT 290301 Score = 96.9 bits (106), Expect = 4e-15 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||||||||| ||| | ||| |||||||| |||| ||| | ||| | Sbjct 290809 AGGTGGACCTGTCCAAAGACCTGCAGC-ACTGGGAGACTCTGAAGGACGAGGAGAGGTTC 290867 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 ||||| ||||| |||| |||||||||||||||||||| |||||||||||||| ||| Sbjct 290868 TTCATTTCTCACGTTTTGGCTTTTTTCGCCGCCAGCGACGGAATCGTCAACGAGAACCTG 290927 Query 116804 GT 116805 || Sbjct 290928 GT 290929 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||||||||||||| | ||||| | || ||||| || || || Sbjct 291022 GGTGGAGCGCTTCATGCAGGAGGTGCAGGTGACGGAGGCCAGATGTTTCTATGGGTTCCA 291081 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| ||||||||||| ||| Sbjct 291082 GATCGCCATGGAGAACATCCACTCAGAGATGTACAGTCTGCTCATCGACACCTAC 291136 >seq11381 Length=12543884 Score = 104 bits (114), Expect = 2e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||| | || |||||| | |||| ||||||||||||||||| ||||| ||| Sbjct 9285112 GAGCCACTGCTTCAAGAAAACCCCAGAAGGTTTGTGATTTTCCCCATACATTACCCTGAC 9285171 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGG 116690 || ||| |||||||| |||| |||| || |||||||| || |||||||||| Sbjct 9285172 ATCTGGAAAATGTACAAGCAGGCACAGGCATCCTTCTGGACAGTGGAGGAGGTGG 9285226 >seq14790 Length=565 Score = 96.9 bits (106), Expect = 4e-15 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||||||||| ||| | ||| |||||||| |||| ||| | ||| | Sbjct 393 AGGTGGACCTGTCCAAAGACCTGCAGC-ACTGGGAGACTCTGAAGGACGAGGAGAGGTTC 451 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 ||||| ||||| |||| |||||||||||||||||||| |||||||||||||| ||| Sbjct 452 TTCATTTCTCACGTTTTGGCTTTTTTCGCCGCCAGCGACGGAATCGTCAACGAGAACCTG 511 Query 116804 GT 116805 || Sbjct 512 GT 513 >seq16311 Length=87806 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | || ||||| || || |||| ||| |||||||||||||| |||| ||| Sbjct 7402 GGAATCCCCCCTGATCAGCAGCGTCTGATCTTCGCAGGCAAACAGCTGGAGGACGGACGC 7461 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 || || |||||||||||||||||| Sbjct 7462 ACTCTGTCCGACTACAACATCCAGAA 7487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515112163211200