Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1 100 5e-16 seq13501 84.2 4e-11 >seq1 Length=17765049 Score = 100 bits (110), Expect = 5e-16 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 |||||| ||| | |||| |||||| || || ||||| | || | ||||| || || Sbjct 7548992 GATAGCATCAGCTCTTTGGTGGTACTACATCTCTAAAGGAGTGGAGTTTTTGGACACTGT 7548933 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 ||||||||| | |||||||| || || || || |||||| ||||||| || ||||| | Sbjct 7548932 ATTTTTCATTTTGAGGAAAAAGTTCAACCAAGTCAGTTTTTTACACGTCTACCATCACTG 7548873 Query 52005 TACTATGTTTACTCTAG-GATGGATAGGTATTAAATGGTTTGCTGGAGGTCAGG 52057 || ||||| | ||| | | ||||| || || |||||| | | ||||| |||| Sbjct 7548872 CACCATGTTCA-TCTTGTGGTGGATTGGCATCAAATGGGTCCCCGGAGGACAGG 7548820 >seq13501 Length=12216461 Score = 84.2 bits (92), Expect = 4e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 ||||||||||||||||| | || | ||||||||| | |||||| |||||||| Sbjct 6011200 GCATTTTTTGGAGCTCACATGAACGCAGCGATCCATGTTCTGATGTACTTGTATTATGGA 6011141 Query 52117 ATGGCCGCTTGTGGTCCTATG-TTCAGAAAGTATCTATGGTGGAA 52160 ||||| ||||||| |||| | ||||| |||||||| |||||||| Sbjct 6011140 CTGGCCTCTTGTGGACCTAAGATTCAG-AAGTATCTTTGGTGGAA 6011097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923005005864800