Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq10191 104 3e-17 seq9094 102 9e-17 seq8266 102 9e-17 seq3331 102 9e-17 seq3330 100 3e-16 seq11085 95.1 1e-14 seq2888 95.1 1e-14 seq10290 89.7 6e-13 >seq10191 Length=449533 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 ||||||||| || | |||||| |||||| ||||||||||||||||||||| |||||||| Sbjct 227001 ATTTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 227060 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 227061 CACTATACTAACGAGGA 227077 Score = 100 bits (110), Expect = 3e-16 Identities = 73/84 (87%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 60057 AAAAATTTT---CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||| || |||| || | ||||||||||||| ||||||||||||||||||||| | Sbjct 234300 AAAAATATTTGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 234359 Query 60114 TACTCACCACTATACTACCGAGGA 60137 ||||||||||||||||| |||||| Sbjct 234360 TACTCACCACTATACTAACGAGGA 234383 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 |||| |||| || | |||||| |||||| ||||||||||||||||||||| |||||||| Sbjct 230321 ATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 230380 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 230381 CACTATACTAACGAGGA 230397 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 |||| |||| || | |||||| |||||| ||||||||||||||||||||| |||||||| Sbjct 231205 ATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 231264 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 231265 CACTATACTAACGAGGA 231281 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||| Sbjct 229475 TTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 229534 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 229535 ACTATACTAACGAGGA 229550 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||| Sbjct 236734 TTTACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 236793 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 236794 ACTATACTAACGAGGA 236809 >seq9094 Length=692760 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| |||| |||| || | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 102687 AAAGATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 102746 Query 60117 TCACCACTATACTACCGAGGA 60137 |||||||||||||| |||||| Sbjct 102747 TCACCACTATACTAACGAGGA 102767 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| |||| |||| || | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 112272 AAATATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 112331 Query 60117 TCACCACTATACTACCGAGGA 60137 |||||||||||||| |||||| Sbjct 112332 TCACCACTATACTAACGAGGA 112352 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 |||| |||| || | |||||| |||||| ||||||||||||||||||||| |||||||| Sbjct 102214 ATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 102273 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 102274 CACTATACTAACGAGGA 102290 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||| Sbjct 103701 TTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 103760 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 103761 ACTATACTAACGAGGA 103776 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 96688 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 96747 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 96748 TACTAACGAGGA 96759 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 100492 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 100551 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 100552 TACTAACGAGGA 100563 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 111025 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 111084 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 111085 TACTAACGAGGA 111096 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | |||||| |||||| |||||||||| |||||||||| ||||||||| Sbjct 97142 TTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCCTGACAGGCGGGGATACTCACC 97201 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 97202 ACTATACTAACGAGGA 97217 >seq8266 Length=1278483 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 1027587 TTATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 1027528 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 1027527 ACTATACTAACGAGGA 1027512 >seq3331 Length=1622721 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || || |||| |||| || | ||||||||||||| ||||||||||||||||||||| | Sbjct 1382089 ATAAAGAATTGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 1382148 Query 60114 TACTCACCACTATACTACCGAGGA 60137 ||||||||||||||||| |||||| Sbjct 1382149 TACTCACCACTATACTAACGAGGA 1382172 >seq3330 Length=8958070 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 5184714 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 5184773 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 5184774 CTATACTAACGAGGA 5184788 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 7078557 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7078616 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 7078617 TACTAACGAGGA 7078628 >seq11085 Length=328877 Score = 95.1 bits (104), Expect = 1e-14 Identities = 166/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 42948 TCCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 43007 ||| | | || |||||| |||| | ||||||||| | ||| ||||| || || ||| Sbjct 148077 TCCCAATTTCTTCCTCTCAAACATAGCACCAAATGGAGGGTGGATTCCTTCTGCATGTTG 148018 Query 43008 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 43067 || || | || || | |||| || |||||||||||||| || || |||| ||||||| Sbjct 148017 TAGTCTGAGAGGGTATGACCGTCTTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGCTGG 147958 Query 43068 TCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTC 43127 || | || | || ||| || ||| ||| || | | | | ||||| || Sbjct 147957 TCAGGAGGAATATCTTCTTTGCCCTGGATCTTTGCCTTAACATTTTCAATGGTGTCACTA 147898 Query 43128 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 |||||||| | | |||||| ||||| | || || ||||| ||||||| |||||||| Sbjct 147897 GATTCCACCTGCAACGTGAT-GTTTTTTCGGTCAGGGTCTTGACAAAGA-CTGCATTTT 147841 >seq2888 Length=35643 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 13378 CTCCTCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 13437 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 13438 TACTAACGAGGA 13449 >seq10290 Length=4455921 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||||| || | ||| | ||| || || || || ||||| |||| Sbjct 2170935 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 2170876 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| || || || || | | |||||| || | || Sbjct 2170875 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGA 2170816 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCAC 43135 | || ||||||||| ||| | || | | | | | || ||||||||| | ||||| Sbjct 2170815 ATGCCTTCCTTGTCC-TGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCAC 2170757 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || | |||||||||||||| || || || || |||||||| ||||| || Sbjct 2170756 CTCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 2170706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571698804893600