Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq9898 358 6e-94 seq11714 129 5e-25 seq9943 84.2 2e-11 seq10290 82.4 7e-11 >seq9898 Length=4754808 Score = 358 bits (396), Expect = 6e-94 Identities = 996/1519 (66%), Gaps = 31/1519 (2%) Strand=Plus/Minus Query 22430 GTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGT 22489 |||| || |||| |||||| |||| || | |||||||| ||||| | ||| | |||| Sbjct 101336 GTCAGGTCCTTGAGCAGATGTGGGTTTACAATCTGAAACTCTCCGGAGAGGACTCTGCGT 101277 Query 22490 TGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTC 22549 ||| |||||| ||| | | ||||| || |||||||| || ||||| || || || Sbjct 101276 GTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCTAGTATTTGTGCTGTG 101217 Query 22550 GAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTA 22609 ||||| || ||||| || ||||||| || ||| |||| || || || | ||| || Sbjct 101216 GAAGCAGTAGGCATGGGGGCCAACAACAGGCTGTTCCTCACACCATGTTTAGTAATCTTC 101157 Query 22610 CTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTAT 22669 ||| |||| | ||||||||| || | | |||| || || |||||||| |||||| Sbjct 101156 TCCTTAAGCAGCTTCCAGTCCCAGAGCGCAGTCGGC---ACCTTCTCCCACATGTCGTAT 101100 Query 22670 TGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCG 22729 |||| | ||| |||| | || ||| ||| || || || || || | | | | Sbjct 101099 TGCAGAATGCCCTTACTCACTGGAGAACCTGGGTATGTCTCATAAGGCCCGTCTTTTTCT 101040 Query 22730 GCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTC 22789 || | |||||||| ||||||| ||| |||| ||||| ||||| ||||| | ||||| Sbjct 101039 GCTAACTCGCAGCTTGCCTCCAGGGCGGCGTAGTATATTGTCTCAAAGATCTGGATGTTC 100980 Query 22790 AATTCGGC--GGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCA 22847 | | || ||| | ||||| | || |||||| | | ||| || || || | Sbjct 100979 AG--CAGCTGGGCTTCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGA 100922 Query 22848 TACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCA 22907 |||||| || || || ||||| || | || | ||||| | || || || | Sbjct 100921 GACCCTGCACTCCAATTCCGATTGGCCTGTGGCGCTTGTTCGAGTTCTCGGCTTCAGGGA 100862 Query 22908 AAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATT---TTCGTTA 22964 || || | || || || | |||| | |||||| |||||| || || | Sbjct 100861 CTGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTT---ACAATTACTTTAGTGA 100805 Query 22965 TNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT-TGTAC-AACAAACTTGTTGACGGC 23022 | ||||| ||| | ||| | || | |||| || |||| | || Sbjct 100804 CAGAGGCAAGCTTTTTGAAGTC--AAAGGTCCGTTCTGGAGTAACATACATGTTAAGAGC 100747 Query 23023 GATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGT 23082 || || || | || || ||||| ||||| |||||| || ||||| ||||| || || Sbjct 100746 AATAGAAGCCAAGTTACAGACGGCTACCTCATCTTTGCTTGTATACTCCACAATCTCAGT 100687 Query 23083 ACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGA 23142 || | || || || || || ||||||||||| ||| || || || | || || | Sbjct 100686 GCACAAGTTACTGCATTTGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGC 100627 Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCA 23202 ||| ||||| | |||||| || || || || || ||| ||||| ||||| || ||| Sbjct 100626 ATCTTTGTACAACATGTAAGGAGTTCCTGTTTCAGTCTGAGACTCTATGATGGCATACCA 100567 Query 23203 CATAGTCTGAGCGT-GAACAC--GTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 || |||||| | || ||| || ||| |||||||| | |||||| ||| Sbjct 100566 CACCTGCTGAGCCTTGACCACCCGTTTCACT---CTGCCTTCCTGCTCGTAGCGAGTGTA 100510 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 || | ||||| || | || |||| || |||| || || | | | || ||||| Sbjct 100509 CAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCACAT 100450 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 | | ||| || ||||| || | |||| || | ||| || |||||||| || Sbjct 100449 CAAAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGC 100390 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 ||||| || || || || | | ||||||||| || |||||||| || || || | || Sbjct 100389 ATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTTAACTCAAGGAA 100330 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 ||| |||||||| ||||| ||||| ||||| | |||||| || || |||| ||||| Sbjct 100329 GTCAAACACGTCAAAGTGCCATGGCTCAAGGTACATGGCAAAGGCACCAGGTCGTTTATT 100270 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 ||| || || || ||||| || ||||||||||||||||| || ||||| ||||| || || Sbjct 100269 GCCACCTTGGTCCACGTAGCGCGCCGTGTTGTTGTACACCCTCAGCATTGGCACAAGGCC 100210 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 || || || | || || | ||| ||| || || | | ||| Sbjct 100209 ATTTGAATTACCATTTGTTCCAGCAATGTAGCTTCCTGTTGATCTAATGCAGCTAACTGC 100150 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679 | ||| || ||||| | ||||| || || | ||||||||||| || || || || || Sbjct 100149 TACACCAATCCCTCCTGCAGATTTGGAGATGAGAGCGCATTGTTTGAGTGTATCATAAAT 100090 Query 23680 GCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGG 23739 ||| || |||||||| || || | || | || ||| || ||| | || | | || Sbjct 100089 GCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAACTAGAGAGCTGTGGTCTGTT 100030 Query 23740 CGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCA-TTC---GACATTA 23795 || | || |||||| || || ||| || || || ||| ||| |||| | Sbjct 100029 GGTGCCTGCATTGAACAGAGTGGGAGAGGCATGAGTGAA----CCACTTCTCAGACAGCA 99974 Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCA 23855 | ||||| || || ||||| |||||||| || | ||| || || | || || | || Sbjct 99973 GGTTGTAGGTCTCAATGGCTGCATCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCA 99914 Query 23856 TCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTT 23915 | | ||||| || || | ||| || ||| || ||||| | ||| || || || | Sbjct 99913 TGAGCATGTGCTGTGGACGCTCAGCCACCTTGCCATTGATTTTCAGCAGGTAGGAGCGCT 99854 Query 23916 GCATCGTTTTAAATCCAAA 23934 | || ||||| ||||| Sbjct 99853 CTAGGGTCTTAAAGCCAAA 99835 >seq11714 Length=3826745 Score = 129 bits (142), Expect = 5e-25 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || ||||||||||||| || ||||| ||||| ||||||| || ||||| | Sbjct 1502470 TTTCCACACGCTTCATAAAAAGATCTGGGATCCACAGAGCAAAGAACAGATCTCGGGCTC 1502529 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||||||||| || ||||| || || ||||| | ||| || ||||| || ||||| Sbjct 1502530 TCTGCTCCTCTTTACCAGTGTTTTTCTTTAAATCAAGAAAATCAAACACATCAAAATGCC 1502589 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 | ||||||||||| || ||||| || || ||||||| Sbjct 1502590 ATGGCTCGAGGTAGACTGCAAATGCCCCAGGTCTCT 1502625 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 |||||||||||| ||||| |||||||| || || || || || || | || || ||| Sbjct 1502019 ACCTCGTCTTTGCTTGTGTATTCTACAATCTCAGTGCACAGGTTACTGGATTTGATGGTG 1502078 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || ||||| |||||| || || | ||| || | ||| ||||||||||||||||| || Sbjct 1502079 CCTAAATTCTGCTGGTTACTCTTCCTATTACATGCATCTTTGTAGAGCATGTACGGTGTC 1502138 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| || || || Sbjct 1502139 CCTGTCTCTGTCTGTGACTCAATAATGGC 1502167 >seq9943 Length=499256 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 ||||||||||| ||||| || || ||||| || || ||| || || || || ||| | Sbjct 291958 GCGTTCGCCGCTGTCGAGGGGATCTTCTTCTCTGGATCCTTCGCCGCCATTTTCTGGCTC 292017 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 |||||||| |||||||||||||| ||||| || |||||| Sbjct 292018 AAGAAACGAGGCCTGATGCCCGGACTGACCTTCTCCAACGA 292058 >seq10290 Length=4455921 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| || || |||||||| || ||| | || ||||| || Sbjct 2172855 CATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACTATTACCCTTGAGGTTGAGCCCAG 2172914 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| || ||| | || ||||||||||||| | || || || || Sbjct 2172915 TGACACCATTGAAAACGTGAAAGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCA 2172974 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || | || || || |||||||| ||| | || || || | ||| || || Sbjct 2172975 ACAAAGGCTTATTTTTGCTGGCAAGCAGCTTGAGGATGGGCGTACCCTCTCCGACTACAA 2173034 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || |||||||| |||||||| | || || | || || || |||| Sbjct 2173035 CATCCAGAAAGAATCCACTCTTCACTTAGTCCTGCGCCTCAGAGGTGGTA 2173084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445673792030400