Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq9898 625 4e-174 seq11714 122 1e-22 seq11381 96.9 4e-15 seq9943 96.9 4e-15 >seq9898 Length=4754808 Score = 625 bits (692), Expect = 4e-174 Identities = 1325/1972 (67%), Gaps = 17/1972 (1%) Strand=Plus/Minus Query 62294 CTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62353 ||| ||||||||| | | || | | ||||||| || || |||||||| | | | Sbjct 101400 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATTTCCTCATTCCACAGTCCCCG 101341 Query 62354 CTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCT 62413 || || | | | || ||||| ||||| || | || || ||||| || | ||||| Sbjct 101340 TTCAGTCAGGTCCTTGAGCAGATGTGGGTTTACAATCTGAAACTCTCCGGAGAGGACTCT 101281 Query 62414 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62473 || ||||| || || ||||| || | ||| | |||||||| || || | ||||| || Sbjct 101280 GCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCTAGTATTTGTGC 101221 Query 62474 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62533 || || ||||| ||||| || |||| ||| | || || || | ||| | | | | || Sbjct 101220 TGTGGAAGCAGTAGGCATGGGGGCCAACAACAGGCTGTTCCTCACACCATGTTTAGTAAT 101161 Query 62534 TTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATA 62593 || || || || | | ||| | ||| || | | ||| || || Sbjct 101160 CTTCTCCTTAAGCAGCTTCCAGTCCCAGAGCGCAGTCGGCACCTTCTCCCACATGTCGTA 101101 Query 62594 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTC 62653 ||| ||||| || ||||| | || ||| ||||| ||||| || || || || || Sbjct 101100 TTGCAGAATGCCCTTACTCACTGGAGAACCTGGGTATGTCTCATAAGGCCCGTCTTTTTC 101041 Query 62654 AGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATT 62713 |||| | || || ||||| | || |||| || || || |||||||||| | || Sbjct 101040 TGCTAACTCGCAGCTTGCCTCCAGGGCGGCGTAGTATATTGTCTCAAAGATCTGGATGTT 100981 Query 62714 TAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62773 || || ||||| || || |||||||||||| | |||||| || || || || | Sbjct 100980 CAGCAGCTGGGCTTCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAG 100921 Query 62774 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62833 || || || ||||| ||||| || || || | ||| || ||| | || ||||| || | Sbjct 100920 ACCCTGCACTCCAATTCCGATTGGCCTGTGGCGCTTGTTCGAGTTCTCGGCTTCAGGGAC 100861 Query 62834 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62893 || || || ||||| || || || || ||||| ||||| ||||||||||| ||| Sbjct 100860 TGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACAGA 100801 Query 62894 CTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACAGA 62950 || || || ||||| || ||| | ||| ||||||| | |||| ||| Sbjct 100800 GGCAAGCTTTTTGAAGTCAAAGGTCCGTTCTGGAGTAACATACATGTTAAGAGCAATAGA 100741 Query 62951 TGCCAGATTACACACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 |||| ||||| ||||||||||||| | || | | ||| | | ||||||||||| Sbjct 100740 AGCCAAGTTACAGACGGCTACCTCATCTTTGCTT--GTATACTCCACAATCTCAGTGCAC 100683 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 | ||||| || |||||||| || ||||| || ||||||||||| ||||||| ||||| Sbjct 100682 AAGTTACTGCATTTGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCATCT 100623 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128 || || | ||| | ||||| || |||||| ||||||| ||||| || || | ||| || Sbjct 100622 TTGTACAACATGTAAGGAGTTCCTGTTTCAGTCTGAGACTCTATGATGGCATACCACACC 100563 Query 63129 ACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGT 63188 ||||||| | | ||| ||| | ||| ||||| |||| |||| Sbjct 100562 TGCTGAGCCTTGACCACCCGTTTCACTCTGCCTTCCTGCTCGTAGCGAGTGTACAGCTTC 100503 Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 || ||||| || |||||| | |||| | ||| || ||| || |||||||| ||| Sbjct 100502 TCAAACTCCTCCCCCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGAC 100443 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63307 || || || | | ||| | ||||| || | |||||| ||||| || || ||| || Sbjct 100442 CAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGC-ATAGAA 100384 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 || |||| || || || ||||| || || || ||||| || | || ||||| | | Sbjct 100383 GAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTTAACTCAAGGAAGTCAAA 100324 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 | ||| | ||||| || || | ||| ||||| | | ||||| ||||| || || || Sbjct 100323 CACGTCAAAGTGCCATGGCTCAAGGTACATGGCAAAGGCACCAGGTCGTTTATTGCCACC 100264 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 || || | ||| | || ||||| || || || |||| |||||| | || || ||||| Sbjct 100263 TTGGTCCACGTAGCGCGCCGTGTTGTTGTACACCCTCAGCATTGGCACAAGGCCATTTGA 100204 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547 ||||||| || || | || |||| ||| | | | ||| |||| || || ||| Sbjct 100203 ATTACCATTTGTTCCAGCAATGTAGCTTCCTGTTGATCTAATGCAGCTAACTGCTACACC 100144 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607 || || ||||| ||| ||||| | |||||| |||| | || ||||| ||||| || Sbjct 100143 AATCCCTCCTGCAGATTTGGAGATGAGAGCGCATTGTTTGAGTGTATCATAAATGCCATC 100084 Query 63608 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCC 63667 ||||| ||||| ||||| || || || || ||||| | || | | | || || Sbjct 100083 AATGCTGTCATCCTTCATGGCCAGCAGGAAGCAACTAGAGAGCTGTGGTCTGTTGGTGCC 100024 Query 63668 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63727 ||||| || | || ||||| || || || ||||| || ||||| || || ||||| || Sbjct 100023 TGCATTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGT 99964 Query 63728 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63787 |||||| |||| || ||||| || || ||||| || || || | ||| | |||||| Sbjct 99963 CTCAATGGCTGCATCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAGCATGTG 99904 Query 63788 CTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63847 ||| || | ||| | | ||| || ||||||| || |||||| || | || || Sbjct 99903 CTGTGGACGCTCAGCCACCTTGCCATTGATTTTCAGCAGGTAGGAGCGCTCTAGGGTCTT 99844 Query 63848 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATC 63907 ||| ||||| | || || ||||| || | || || || ||| | || ||||| || Sbjct 99843 AAAGCCAAAGAAATTATAAGAAAAATCCCTATCATAGATTATAGCAGAGTTGAGGCGGTC 99784 Query 63908 CTTATATTTGTTA--ACTATATCCATGGTAATACTT--GAAATAATCGGAGAATGTTTCC 63963 | | |||| | || ||||| | ||| ||| || || || || || || | Sbjct 99783 --TTTGTTTGCAAGGACAATATCTAGGGT--CTCTTGGGAGATCATGGGGGAGTGGCGCT 99728 Query 63964 CATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttG 64023 ||| ||| || ||||||||||| | ||||||||| || ||||| || | || || | Sbjct 99727 TGTTTAAAGGGTTGACATAGTTGAACAGATCCTCCATGACGTCACTGAACACCTTCTTGG 99668 Query 64024 TTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTT 64083 | || || || || || || | || || | || || |||| ||||||||| || || | Sbjct 99667 TCTCTTTATGGAGGTTGGAAACAGCAATGCGTGCAGCCAGAAGGGCATAATCGGGGTGCT 99608 Query 64084 GTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTC 64143 || || ||||| || || || || || || |||||||| || || || || |||| Sbjct 99607 TAGTGGTTAGTGTGGCAGCAATCTCCGCAGCGAGTGTGTCCAACTCCACAGTGGTCACTC 99548 Query 64144 CATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGT 64203 || | || | ||||| || |||||||| | |||| || || | | |||| || Sbjct 99547 CACTGTACAGACCTTGGATCACCTTCATTGTGATTTGTGCGGGGTCCACAAACTCCGCGT 99488 Query 64204 TTAAGCCATAGCACAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64255 | | || || || | ||| || ||||| |||||||||||||||||||| Sbjct 99487 TGAGCCCGTAACAGAGCTTTTGGATTCGAGAGGTGATTTTATCAAACATGAC 99436 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || ||||| ||||| || || | |||| ||| | || ||||| ||||| |||| Sbjct 101662 TCCAGCCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 101603 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||| || || || || ||| |||| || | |||||||||||| || | || |||| Sbjct 101602 TTAGAGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTGAGTATAGTCT 101543 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62281 | |||| |||||||||| |||||||| | | || | ||| ||||| Sbjct 101542 TCTGTGATATTTCCCAAACTGTTTTATACAGCTGTTTTAAATCATCTGG 101494 >seq11714 Length=3826745 Score = 122 bits (134), Expect = 1e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||||| ||||| ||||| || | ||||||||| |||||| ||||| || ||| | | Sbjct 1501522 CATATGATTCATAAGGTCCATCATGGGCAGCTAGTTCACAACTGGCCTCCAAAGCAGCAT 1501581 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 |||| ||||| ||||| |||| | || |||| || ||||| || |||||||||| Sbjct 1501582 AATATATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCTTCTTCACTTTCAAATGGAT 1501641 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 || | |||||| || ||||| || | || |||||||| || || |||||||| || | Sbjct 1501642 AACGCATGAGAATGAAGGCGTCTGCAAGACCCTGAACACCGATTCCAATAGGTCTGTGGC 1501701 Query 62806 TCTTATTAGA 62815 | | ||||| Sbjct 1501702 GCATGTTAGA 1501711 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| || | ||||| || ||||| ||||||||||| || || || || ||| Sbjct 1503114 GTGCCAGCATTGAACAGTGTAGGGGAGGCGTGAGTAAACCATTTCTCTGAGAGCAGGTTG 1503173 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || |||||||| |||| ||| | ||| || |||||| || || || || | ||| | | Sbjct 1503174 TAGGTCTCAATGGCTGCGTCCACATCTTGTTTATGAATCCCAACAGCCACTCTCATGAGC 1503233 Query 63783 ATGTGCTGAGGTCTTTCAACAA 63804 || |||||||| || ||| ||| Sbjct 1503234 ATATGCTGAGGCCTCTCAGCAA 1503255 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 |||| || ||||||||||| || ||||| | ||||| || |||||||| || || ||| Sbjct 1502037 TATTCTACAATCTCAGTGCACAGGTTACTGGATTTGATGGTGCCTAAATTCTGCTGGTTA 1502096 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 ||||| | ||||| ||||| || || || ||| | || || || || || |||| || Sbjct 1502097 CTCTTCCTATTACATGCATCTTTGTAGAGCATGTACGGTGTCCCTGTCTCTGTCTGTGAC 1502156 Query 63108 TCTATAATCGCTTTCCA 63124 || ||||| || | ||| Sbjct 1502157 TCAATAATGGCATACCA 1502173 >seq11381 Length=12543884 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || ||| | || || ||||||||||| || | ||||| Sbjct 9286990 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGACCGGGCATTAGACCCCTCTTTT 9286931 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||| | |||| || || ||||| || ||||| ||||| ||||| || ||||| | Sbjct 9286930 TCAGCCAATAAATGGCCGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATG 9286871 Query 33724 CAATAAGTCTCTCTCC 33739 | | || ||| || || Sbjct 9286870 CCACAATTCTTTCACC 9286855 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 34078 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 34137 |||| || ||||||||||| || ||||||| ||||| || ||||| |||||||||||| Sbjct 9285226 CCACCTCCTCCACTGTCCAGAAGGATGCCTGTGCCTGCTTGTACATTTTCCAGATGTCAG 9285167 Query 34138 GATATTGGATTGGGAAAATAACAAATCT 34165 | || || || |||||||| ||||| || Sbjct 9285166 GGTAATGTATGGGGAAAATCACAAACCT 9285139 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 |||||||| || | ||||| ||||| |||| |||||||| || || || ||||| ||| Sbjct 9287664 GACATAACACCAAACTTTTGATATTCTGCCACCCGTTTTTCAAAGAAGTTGGTTTTCCCT 9287605 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAA 33384 || | ||| || |||||||| ||||||||||| | ||||||||| Sbjct 9287604 TCAAGTGAGATTGACTCCATGAAGTCAAACGGATTCTCAGCATTGTAAA 9287556 >seq9943 Length=499256 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | |||||| || || || ||||||||||| ||||| || || | Sbjct 292078 CCTCGTCTCTGCTGATGAGTTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 292019 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| ||||| ||||| || |||||||| || || || || || || | Sbjct 292018 TGAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATCCCCTCGACAGCGGCGAACG 291959 Query 33724 C 33724 | Sbjct 291958 C 291958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629686755393600