Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq9898 279 5e-70 seq11381 104 2e-17 seq9943 91.5 1e-13 seq11714 86.0 6e-12 >seq9898 Length=4754808 Score = 279 bits (308), Expect = 5e-70 Identities = 932/1432 (65%), Gaps = 19/1432 (1%) Strand=Plus/Minus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 || ||||| ||||||| |||||| ||||| || | ||||| | ||| || || ||||| Sbjct 101321 AGATGTGGGTTTACAATCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTGCTG 101262 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || | ||| ||||||||||| || | || |||||| | ||| || ||||||||||| Sbjct 101261 GTGTAGGCTTCGATGGACTCATTGTTGCCTAGTATTTGTGCTGTGGAAGCAGTAGGCATG 101202 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | | ||||| || |||| |||||| || |||| ||| || || ||| Sbjct 101201 GGGGCCAACAACAGGCTGTTCCTCACACCATGTTTAGTAATCTTCTCCTTAAGCAGCTTC 101142 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || ||||| | | || || ||| |||||| || ||||| ||||| || |||||| Sbjct 101141 CAGTCCCAGAGCGCAGTCGGCACCTTCTCCCACATGTCGTATTGCAGAATGCCCTTACTC 101082 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT 37422 |||||||| | |||||||||||||| |||| ||| |||| ||||| || | Sbjct 101081 ACTGGAGAACCTGGGTATGTCTCATAAGGCCCGTCTTTTTCTGCTAACTCGCAGCTTGCC 101022 Query 37423 TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCG 37482 || || ||||| || |||||||| || || || || || || | | | ||||| Sbjct 101021 TCCAGGGCGGCGTAGTATATTGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCTTCAGGA 100962 Query 37483 CTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCT 37542 || || |||| ||| | || | || || |||| || | |||||| || || || || Sbjct 100961 CTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACTCCAATTCCG 100902 Query 37543 ATGGGTCTATGTTTCTTATT--AGATCTAGACGATTCTATCACTGGATAATAATTGATAT 37600 || || || || ||| || || ||| | | ||| ||||| || || || || | Sbjct 100901 ATTGGCCTGTGGCGCTTGTTCGAGTTCTCG--GCTTCAGGGACTGGGTAGTAGTTAATGT 100844 Query 37601 CTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAA-CTTGTCGAA- 37658 | || || || || || ||| | || | || ||| || | | ||| ||| | ||| Sbjct 100843 CAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGA-CAGAGGCAAGCTTTTTGAAG 100785 Query 37659 -CATAAATACGTTAT-TATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACA 37716 || | | |||| | | ||||| | | | | | |||||| | | ||||| || Sbjct 100784 TCAAAGGTCCGTTCTGGAGTAACATACATGTTAAGAGCAATAGAAGCCAAGTTACAGACG 100725 Query 37717 GCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATT 37776 || || ||||||| | | || | | | |||||| || || | ||||| || | || Sbjct 100724 GCTACCTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAGTTACTGCATTTGATA 100665 Query 37777 GTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGC 37836 || |||||||| ||||| || | ||||| | |||||| || | || || || Sbjct 100664 GTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGA 100605 Query 37837 GTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGAT 37895 |||||| ||| | |||| ||| || || | | ||| | || || || || || | Sbjct 100604 GTTCCTGTTTCAGTCTGAGACTCTATGATGGCATACCA-CACCTGCTGAGCCTTGACCAC 100546 Query 37896 CGCTTTAAtttttttCTTTGT-TTCGTATTCTATATATAATTTGTTAAAATCATTCCCCC 37954 | ||| | | | ||| | ||||| | || | || | ||| || | ||||| Sbjct 100545 CCGTTTCA-CTCTGCCTTCCTGCTCGTAGCGAGTGTACAGCTTCTCAAACTCCTCCCCCC 100487 Query 37955 ATACATCGCAT--AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTT 38012 | ||| | ||| | || || || || | || ||||| | |||||| || | | || Sbjct 100486 A-ACA-CTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTGGTTGTT 100429 Query 38013 TTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCT 38072 ||| || | | ||| || |||||||| | ||||| ||| || | ||| | || Sbjct 100428 TTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGCATAGAAGAGGTCTCGTGCCCT 100369 Query 38073 ATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCA 38132 | || || || || ||||| |||| || || || || | ||| |||||| Sbjct 100368 CTGCTCCTCTTTACCAGTGTTCTTCTTTAACTCAAGGAAGTCAAACACGTCAAAGTGCCA 100309 Query 38133 TGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCT 38192 ||| || | || || | | || || |||| ||||| || || || | | || | Sbjct 100308 TGGCTCAAGGTACATGGCAAAGGCACCAGGTCGTTTATTGCCACCTTGGTCCACGTAGCG 100249 Query 38193 AACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACC 38252 | ||||| || || | || | ||| || || | ||||| || || || ||| | || Sbjct 100248 CGCCGTGTTGTTGTACACCCTCAGCATTGGCACAAGGCCATTTGAATTACCATTTGTTCC 100189 Query 38253 GGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATG 38312 | || || | || | | || || || | | | || || || |||||| Sbjct 100188 AGCAATGTAGCTTCCTGTTGATCTAATGCAGCTAACTGCTACACCAATCCCTCCTGCAGA 100129 Query 38313 TTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTT 38372 ||| || || | |||||||||||| | |||||| | || || || || ||||||||||| Sbjct 100128 TTTGGAGATGAGAGCGCATTGTTTGAGTGTATCATAAATGCCATCAATGCTGTCATCCTT 100069 Query 38373 TATTGGTAGTATAAAACAACTAGACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATG 38431 || | || | || |||||||| | || || | | | || || || || || | | Sbjct 100068 CATGGCCAGCAGGAAGCAACTAGAGAGCTGTGGTCTGTTG-GTGCCTGCATTGAACAGAG 100010 Query 38432 TAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCAT 38491 | ||||| ||||| ||||||| || || |||| || || || || || | ||| Sbjct 100009 TGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCTGCAT 99950 Query 38492 CTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 | |||||| ||| || || | || ||| ||||| ||||| || ||||| Sbjct 99949 CAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAGCATGTGCTGTGG 99898 >seq11381 Length=12543884 Score = 104 bits (114), Expect = 2e-17 Identities = 107/139 (77%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708 ||||| | ||||| || || |||||||| ||| | || | |||||||| | || | | Sbjct 9286992 AACCT-CATCTCTGCTGATAAGTTCATTGGAATAAGTAAGACCGGGCATTAGACCCCTCT 9286934 Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768 |||| | |||| | || || ||||| || ||||| ||||| |||||||| |||||||||| Sbjct 9286933 TTTTCAGCCAATAAATGGCCGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAA 9286874 Query 11769 ATGCTACTACTCTTTCTCC 11787 |||| || | |||||| || Sbjct 9286873 ATGCCACAATTCTTTCACC 9286855 >seq9943 Length=499256 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || ||||| || || || || | ||||||||||| |||||||| || Sbjct 292076 TCGTCTCTGCTGATGAGTTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCTTG 292017 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || || || || || ||||| ||||| || ||||| ||||| || || || Sbjct 292016 AGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATCCCCTCGACAGCGGCGAACGCC 291957 Query 11774 ACTAC 11778 || || Sbjct 291956 ACCAC 291952 >seq11714 Length=3826745 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 37354 CCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCG 37413 ||||| || | ||||| | ||||| ||||||||||| | | ||||||||| Sbjct 1501500 CCTTTGCTAACAGGAGAGCCAGCATATGATTCATAAGGTCCATCATGGGCAGCTAGTTCA 1501559 Query 37414 CAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTT 37473 ||||| | || | || ||||||||||| || || ||||| || || || | | Sbjct 1501560 CAACTGGCCTCCAAAGCAGCATAATATATGGTCTCAAAAATCTGGATGTTGAGATGCTGG 1501619 Query 37474 GCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACA 37533 |||||||| || || |||| ||| | || | || || | || || | |||||||||| Sbjct 1501620 GCTTCTTCACTTTCAAATGGATAACGCATGAGAATGAAGGCGTCTGCAAGACCCTGAACA 1501679 Query 37534 CCGATACCTATGGGTCTATG 37553 ||||| || || ||||| || Sbjct 1501680 CCGATTCCAATAGGTCTGTG 1501699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468427463972800