Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq9898 279 5e-70
seq11381 104 2e-17
seq9943 91.5 1e-13
seq11714 86.0 6e-12
>seq9898
Length=4754808
Score = 279 bits (308), Expect = 5e-70
Identities = 932/1432 (65%), Gaps = 19/1432 (1%)
Strand=Plus/Minus
Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182
|| ||||| ||||||| |||||| ||||| || | ||||| | ||| || || |||||
Sbjct 101321 AGATGTGGGTTTACAATCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTGCTG 101262
Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242
|| || | ||| ||||||||||| || | || |||||| | ||| || |||||||||||
Sbjct 101261 GTGTAGGCTTCGATGGACTCATTGTTGCCTAGTATTTGTGCTGTGGAAGCAGTAGGCATG 101202
Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302
|| || | | ||||| || |||| |||||| || |||| ||| || || |||
Sbjct 101201 GGGGCCAACAACAGGCTGTTCCTCACACCATGTTTAGTAATCTTCTCCTTAAGCAGCTTC 101142
Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362
|| ||||| | | || || ||| |||||| || ||||| ||||| || ||||||
Sbjct 101141 CAGTCCCAGAGCGCAGTCGGCACCTTCTCCCACATGTCGTATTGCAGAATGCCCTTACTC 101082
Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT 37422
|||||||| | |||||||||||||| |||| ||| |||| ||||| || |
Sbjct 101081 ACTGGAGAACCTGGGTATGTCTCATAAGGCCCGTCTTTTTCTGCTAACTCGCAGCTTGCC 101022
Query 37423 TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCG 37482
|| || ||||| || |||||||| || || || || || || | | | |||||
Sbjct 101021 TCCAGGGCGGCGTAGTATATTGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCTTCAGGA 100962
Query 37483 CTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCT 37542
|| || |||| ||| | || | || || |||| || | |||||| || || || ||
Sbjct 100961 CTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACTCCAATTCCG 100902
Query 37543 ATGGGTCTATGTTTCTTATT--AGATCTAGACGATTCTATCACTGGATAATAATTGATAT 37600
|| || || || ||| || || ||| | | ||| ||||| || || || || |
Sbjct 100901 ATTGGCCTGTGGCGCTTGTTCGAGTTCTCG--GCTTCAGGGACTGGGTAGTAGTTAATGT 100844
Query 37601 CTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAA-CTTGTCGAA- 37658
| || || || || || ||| | || | || ||| || | | ||| ||| | |||
Sbjct 100843 CAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGA-CAGAGGCAAGCTTTTTGAAG 100785
Query 37659 -CATAAATACGTTAT-TATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACA 37716
|| | | |||| | | ||||| | | | | | |||||| | | ||||| ||
Sbjct 100784 TCAAAGGTCCGTTCTGGAGTAACATACATGTTAAGAGCAATAGAAGCCAAGTTACAGACG 100725
Query 37717 GCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATT 37776
|| || ||||||| | | || | | | |||||| || || | ||||| || | ||
Sbjct 100724 GCTACCTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAGTTACTGCATTTGATA 100665
Query 37777 GTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGC 37836
|| |||||||| ||||| || | ||||| | |||||| || | || || ||
Sbjct 100664 GTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGA 100605
Query 37837 GTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGAT 37895
|||||| ||| | |||| ||| || || | | ||| | || || || || || |
Sbjct 100604 GTTCCTGTTTCAGTCTGAGACTCTATGATGGCATACCA-CACCTGCTGAGCCTTGACCAC 100546
Query 37896 CGCTTTAAtttttttCTTTGT-TTCGTATTCTATATATAATTTGTTAAAATCATTCCCCC 37954
| ||| | | | ||| | ||||| | || | || | ||| || | |||||
Sbjct 100545 CCGTTTCA-CTCTGCCTTCCTGCTCGTAGCGAGTGTACAGCTTCTCAAACTCCTCCCCCC 100487
Query 37955 ATACATCGCAT--AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTT 38012
| ||| | ||| | || || || || | || ||||| | |||||| || | | ||
Sbjct 100486 A-ACA-CTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTGGTTGTT 100429
Query 38013 TTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCT 38072
||| || | | ||| || |||||||| | ||||| ||| || | ||| | ||
Sbjct 100428 TTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGCATAGAAGAGGTCTCGTGCCCT 100369
Query 38073 ATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCA 38132
| || || || || ||||| |||| || || || || | ||| ||||||
Sbjct 100368 CTGCTCCTCTTTACCAGTGTTCTTCTTTAACTCAAGGAAGTCAAACACGTCAAAGTGCCA 100309
Query 38133 TGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCT 38192
||| || | || || | | || || |||| ||||| || || || | | || |
Sbjct 100308 TGGCTCAAGGTACATGGCAAAGGCACCAGGTCGTTTATTGCCACCTTGGTCCACGTAGCG 100249
Query 38193 AACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACC 38252
| ||||| || || | || | ||| || || | ||||| || || || ||| | ||
Sbjct 100248 CGCCGTGTTGTTGTACACCCTCAGCATTGGCACAAGGCCATTTGAATTACCATTTGTTCC 100189
Query 38253 GGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATG 38312
| || || | || | | || || || | | | || || || ||||||
Sbjct 100188 AGCAATGTAGCTTCCTGTTGATCTAATGCAGCTAACTGCTACACCAATCCCTCCTGCAGA 100129
Query 38313 TTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTT 38372
||| || || | |||||||||||| | |||||| | || || || || |||||||||||
Sbjct 100128 TTTGGAGATGAGAGCGCATTGTTTGAGTGTATCATAAATGCCATCAATGCTGTCATCCTT 100069
Query 38373 TATTGGTAGTATAAAACAACTAGACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATG 38431
|| | || | || |||||||| | || || | | | || || || || || | |
Sbjct 100068 CATGGCCAGCAGGAAGCAACTAGAGAGCTGTGGTCTGTTG-GTGCCTGCATTGAACAGAG 100010
Query 38432 TAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCAT 38491
| ||||| ||||| ||||||| || || |||| || || || || || | |||
Sbjct 100009 TGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCTGCAT 99950
Query 38492 CTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543
| |||||| ||| || || | || ||| ||||| ||||| || |||||
Sbjct 99949 CAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAGCATGTGCTGTGG 99898
>seq11381
Length=12543884
Score = 104 bits (114), Expect = 2e-17
Identities = 107/139 (77%), Gaps = 1/139 (1%)
Strand=Plus/Minus
Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708
||||| | ||||| || || |||||||| ||| | || | |||||||| | || | |
Sbjct 9286992 AACCT-CATCTCTGCTGATAAGTTCATTGGAATAAGTAAGACCGGGCATTAGACCCCTCT 9286934
Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768
|||| | |||| | || || ||||| || ||||| ||||| |||||||| ||||||||||
Sbjct 9286933 TTTTCAGCCAATAAATGGCCGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAA 9286874
Query 11769 ATGCTACTACTCTTTCTCC 11787
|||| || | |||||| ||
Sbjct 9286873 ATGCCACAATTCTTTCACC 9286855
>seq9943
Length=499256
Score = 91.5 bits (100), Expect = 1e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|||||||| || || ||||| || || || || | ||||||||||| |||||||| ||
Sbjct 292076 TCGTCTCTGCTGATGAGTTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCTTG 292017
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| || || || || || || ||||| ||||| || ||||| ||||| || || ||
Sbjct 292016 AGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATCCCCTCGACAGCGGCGAACGCC 291957
Query 11774 ACTAC 11778
|| ||
Sbjct 291956 ACCAC 291952
>seq11714
Length=3826745
Score = 86.0 bits (94), Expect = 6e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 37354 CCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCG 37413
||||| || | ||||| | ||||| ||||||||||| | | |||||||||
Sbjct 1501500 CCTTTGCTAACAGGAGAGCCAGCATATGATTCATAAGGTCCATCATGGGCAGCTAGTTCA 1501559
Query 37414 CAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTT 37473
||||| | || | || ||||||||||| || || ||||| || || || | |
Sbjct 1501560 CAACTGGCCTCCAAAGCAGCATAATATATGGTCTCAAAAATCTGGATGTTGAGATGCTGG 1501619
Query 37474 GCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACA 37533
|||||||| || || |||| ||| | || | || || | || || | ||||||||||
Sbjct 1501620 GCTTCTTCACTTTCAAATGGATAACGCATGAGAATGAAGGCGTCTGCAAGACCCTGAACA 1501679
Query 37534 CCGATACCTATGGGTCTATG 37553
||||| || || ||||| ||
Sbjct 1501680 CCGATTCCAATAGGTCTGTG 1501699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468427463972800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |