Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq9898 628 3e-175 seq11714 122 1e-22 seq11381 120 4e-22 seq9943 96.9 5e-15 >seq9898 Length=4754808 Score = 628 bits (696), Expect = 3e-175 Identities = 1325/1972 (67%), Gaps = 17/1972 (1%) Strand=Plus/Minus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 ||| ||||||||| | || || | | ||||||| || || |||||||| | | | Sbjct 101400 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATTTCCTCATTCCACAGTCCCCG 101341 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 || || | | | || ||||| || || || | ||||| ||||| || | ||||| Sbjct 101340 TTCAGTCAGGTCCTTGAGCAGATGTGGGTTTACAATCTGAAACTCTCCGGAGAGGACTCT 101281 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || ||||| || || ||||| || | ||| | |||||||| || || | ||||| || Sbjct 101280 GCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCTAGTATTTGTGC 101221 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 || || ||||| ||||| || |||| ||| | || || || | ||| | | | | || Sbjct 101220 TGTGGAAGCAGTAGGCATGGGGGCCAACAACAGGCTGTTCCTCACACCATGTTTAGTAAT 101161 Query 65327 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 65386 || || || || | | ||| | ||| || | | ||| || Sbjct 101160 CTTCTCCTTAAGCAGCTTCCAGTCCCAGAGCGCAGTCGGCACCTTCTCCCACATGTCGTA 101101 Query 65387 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 65446 ||| ||||| || ||||| | || ||| ||||| || || || || || || || Sbjct 101100 TTGCAGAATGCCCTTACTCACTGGAGAACCTGGGTATGTCTCATAAGGCCCGTCTTTTTC 101041 Query 65447 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506 |||| || || || ||||| | || |||| || || || || ||||||| | || Sbjct 101040 TGCTAACTCGCAGCTTGCCTCCAGGGCGGCGTAGTATATTGTCTCAAAGATCTGGATGTT 100981 Query 65507 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 65566 || || ||||| | || |||||||||||| | |||||| || || ||||| | Sbjct 100980 CAGCAGCTGGGCTTCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAG 100921 Query 65567 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 65626 || || || ||||| ||||| || || || | ||| || ||| | || ||||| || | Sbjct 100920 ACCCTGCACTCCAATTCCGATTGGCCTGTGGCGCTTGTTCGAGTTCTCGGCTTCAGGGAC 100861 Query 65627 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 65686 || || || ||||| || || || || ||||| ||||| ||||||||||| ||| Sbjct 100860 TGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACAGA 100801 Query 65687 CTTCAGTTTGAGAAAATCAAATCGCTCATCTA---TTACAAACATGTTCAATGCAACAGA 65743 || || || ||||| | ||| | ||| ||||||| | |||| ||| Sbjct 100800 GGCAAGCTTTTTGAAGTCAAAGGTCCGTTCTGGAGTAACATACATGTTAAGAGCAATAGA 100741 Query 65744 TGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAA 65801 |||| ||||| ||||||||||||| | || | | ||| | | ||||||||||| Sbjct 100740 AGCCAAGTTACAGACGGCTACCTCATCTTTGCTT--GTATACTCCACAATCTCAGTGCAC 100683 Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861 | ||||| || ||||| || || ||||| || ||||||||||| ||||||| ||||| Sbjct 100682 AAGTTACTGCATTTGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCATCT 100623 Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 65921 || || | ||| | ||||| || |||||| ||||||| ||||| || || | ||| || Sbjct 100622 TTGTACAACATGTAAGGAGTTCCTGTTTCAGTCTGAGACTCTATGATGGCATACCACACC 100563 Query 65922 ACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGT 65981 ||||||| | | ||| ||| ||| ||||| | || |||| Sbjct 100562 TGCTGAGCCTTGACCACCCGTTTCACTCTGCCTTCCTGCTCGTAGCGAGTGTACAGCTTC 100503 Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 || ||||| || |||||| | |||| ||||| || ||| || |||||||| ||| Sbjct 100502 TCAAACTCCTCCCCCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGAC 100443 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 66100 || || || | | ||| | ||||| || | |||||| ||||| || || ||| || Sbjct 100442 CAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGC-ATAGAA 100384 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 | |||| | || || ||||| || || || ||||| || | || ||||| | | Sbjct 100383 GAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTTAACTCAAGGAAGTCAAA 100324 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 | ||| | ||||| || || | ||| ||||| | | ||||| ||||| || || || Sbjct 100323 CACGTCAAAGTGCCATGGCTCAAGGTACATGGCAAAGGCACCAGGTCGTTTATTGCCACC 100264 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 || || | ||| | || ||||| || || || |||| |||||| | || ||||| || Sbjct 100263 TTGGTCCACGTAGCGCGCCGTGTTGTTGTACACCCTCAGCATTGGCACAAGGCCATTTGA 100204 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACC 66340 ||||||| || || | || |||||||| ||| | ||| |||| || || ||| Sbjct 100203 ATTACCATTTGTTCCAGCAATGTAGCTTCCTGTTGATCTAATGCAGCTAACTGCTACACC 100144 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 || || ||||| ||| ||||| | |||||| |||| | |||||||| ||||| || Sbjct 100143 AATCCCTCCTGCAGATTTGGAGATGAGAGCGCATTGTTTGAGTGTATCATAAATGCCATC 100084 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 66460 || || |||||| ||||| || || || || ||||| | || | | | || || Sbjct 100083 AATGCTGTCATCCTTCATGGCCAGCAGGAAGCAACTAGAGAGCTGTGGTCTGTTGGTGCC 100024 Query 66461 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 66520 ||||| || | || ||||| || || || ||||| || ||||| || || ||||| || Sbjct 100023 TGCATTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGT 99964 Query 66521 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 66580 |||||| |||| || ||||| || || ||||| || || || | ||| | |||||| Sbjct 99963 CTCAATGGCTGCATCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAGCATGTG 99904 Query 66581 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 66640 ||| || | ||| | | |||| || ||||||| || |||||| || | || || Sbjct 99903 CTGTGGACGCTCAGCCACCTTGCCATTGATTTTCAGCAGGTAGGAGCGCTCTAGGGTCTT 99844 Query 66641 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 66700 ||| ||||| | || || ||||| || | || || || ||| | |||||||| || Sbjct 99843 AAAGCCAAAGAAATTATAAGAAAAATCCCTATCATAGATTATAGCAGAGTTGAGGCGGTC 99784 Query 66701 CTTATATTTGTTA--ACTACATCCATGGTAATACTT--GAAATAATCGGAGAATGTTTCC 66756 | | |||| | || | ||| | ||| ||| || || || || || || | Sbjct 99783 --TTTGTTTGCAAGGACAATATCTAGGGT--CTCTTGGGAGATCATGGGGGAGTGGCGCT 99728 Query 66757 CATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttG 66816 ||| ||| |||||||||||||| | ||||||||| || ||||| || | || || | Sbjct 99727 TGTTTAAAGGGTTGACATAGTTGAACAGATCCTCCATGACGTCACTGAACACCTTCTTGG 99668 Query 66817 TTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTT 66876 | ||||| || || || || || || || | || || | || ||||||||| || || | Sbjct 99667 TCTCTTTATGGAGGTTGGAAACAGCAATGCGTGCAGCCAGAAGGGCATAATCGGGGTGCT 99608 Query 66877 GTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTC 66936 || || ||||| || || || || || || |||||||| || || || || |||| Sbjct 99607 TAGTGGTTAGTGTGGCAGCAATCTCCGCAGCGAGTGTGTCCAACTCCACAGTGGTCACTC 99548 Query 66937 CATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGT 66996 || | || | |||||||| |||||||| | |||| || || | | || | || Sbjct 99547 CACTGTACAGACCTTGGATCACCTTCATTGTGATTTGTGCGGGGTCCACAAACTCCGCGT 99488 Query 66997 TTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGAC 67048 | | || ||||| | ||| || ||||| |||||||||||||||||||| Sbjct 99487 TGAGCCCGTAACAGAGCTTTTGGATTCGAGAGGTGATTTTATCAAACATGAC 99436 Score = 107 bits (118), Expect = 3e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || ||||| ||||| || || | |||| ||| | || ||||| ||||| |||| Sbjct 101662 TCCAGCCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 101603 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||| || || || || ||| |||| || | |||||||||||| || | || |||| Sbjct 101602 TTAGAGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTGAGTATAGTCT 101543 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 65074 | |||| |||||||||| |||||||| | | || | ||| ||||| Sbjct 101542 TCTGTGATATTTCCCAAACTGTTTTATACAGCTGTTTTAAATCATCTGG 101494 >seq11714 Length=3826745 Score = 122 bits (134), Expect = 1e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||||| || || ||||| || | |||||||||||||||| ||||| || ||| | | Sbjct 1501522 CATATGATTCATAAGGTCCATCATGGGCAGCTAGTTCACAACTGGCCTCCAAAGCAGCAT 1501581 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 |||| ||||| || || |||| | || |||| || ||||| || |||||||||| Sbjct 1501582 AATATATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCTTCTTCACTTTCAAATGGAT 1501641 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 || | |||||| || |||||||| | || |||||||| || || |||||||| || | Sbjct 1501642 AACGCATGAGAATGAAGGCGTCTGCAAGACCCTGAACACCGATTCCAATAGGTCTGTGGC 1501701 Query 65599 TCTTATTAGA 65608 | | ||||| Sbjct 1501702 GCATGTTAGA 1501711 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | ||||| || ||||| ||||||||||| || || || || ||| Sbjct 1503114 GTGCCAGCATTGAACAGTGTAGGGGAGGCGTGAGTAAACCATTTCTCTGAGAGCAGGTTG 1503173 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || |||||||| |||| ||| | ||| || |||||| || || || || | ||| | | Sbjct 1503174 TAGGTCTCAATGGCTGCGTCCACATCTTGTTTATGAATCCCAACAGCCACTCTCATGAGC 1503233 Query 66576 ATGTGCTGAGGTCTTTCA 66593 || |||||||| || ||| Sbjct 1503234 ATATGCTGAGGCCTCTCA 1503251 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840 |||| || ||||||||||| || ||||| | |||||||| |||||||| || || ||| Sbjct 1502037 TATTCTACAATCTCAGTGCACAGGTTACTGGATTTGATGGTGCCTAAATTCTGCTGGTTA 1502096 Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 65900 ||||| | ||||| ||||| || || || ||| | || || || || || |||| || Sbjct 1502097 CTCTTCCTATTACATGCATCTTTGTAGAGCATGTACGGTGTCCCTGTCTCTGTCTGTGAC 1502156 Query 65901 TCTATAATCGCTTTCCA 65917 || ||||| || | ||| Sbjct 1502157 TCAATAATGGCATACCA 1502173 >seq11381 Length=12543884 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| |||||| | || || ||||||||||| || | ||||| Sbjct 9286990 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGACCGGGCATTAGACCCCTCTTTT 9286931 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||| | |||| |||||| |||||||| ||||||||||| ||||| || ||||| | Sbjct 9286930 TCAGCCAATAAATGGCCGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATG 9286871 Query 36300 CAATAAGTCTCTCTCC 36315 | | || ||| || || Sbjct 9286870 CCACAATTCTTTCACC 9286855 >seq9943 Length=499256 Score = 96.9 bits (106), Expect = 5e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| || || | ||||||||| || || ||||||||||| ||||| || || | Sbjct 292078 CCTCGTCTCTGCTGATGAGTTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 292019 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || |||| || || |||||||| ||||| || || || || || || || | Sbjct 292018 TGAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATCCCCTCGACAGCGGCGAACG 291959 Query 36300 C 36300 | Sbjct 291958 C 291958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658036064600800