Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq10290 95.1 1e-14
>seq10290
Length=4455921
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| || ||||| |||||||| || || || |||| |||||||||||| || ||
Sbjct 2171133 GTGGATTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCGTCTTCGAGCTGCTTGCCG 2171074
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686
||| | ||||| | |||||||| || || |||||||| ||||| ||| | || | ||
Sbjct 2171073 GCAAAAATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC-CTGAATCTTGGCCTT 2171015
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | |||||| ||||||||||||| | || | ||||| || || | ||
Sbjct 2171014 CACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAAGTGATGGTCTTCCCAGTGAGGGT 2170955
Query 139747 TTTTACGAATATTTGCATA 139765
||| || || || ||||||
Sbjct 2170954 TTTCACAAAGATCTGCATA 2170936
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
||||| || | | ||| | ||| | |||| || || ||||| || ||||| || ||
Sbjct 2173313 TGGCCACCCCTGAGACGAAGAACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCA 2173254
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
|| || | |||||||||||| || |||||| |||||| | |||||||| ||
Sbjct 2173253 GACAGAGTACGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGG 2173194
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714
|| |||||||| ||||| ||| || || | | || | ||||| ||||||||
Sbjct 2173193 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCC 2173134
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||| | || | ||||| || || | ||||| || || || ||||||
Sbjct 2173133 ACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCATA 2173083
Score = 91.5 bits (100), Expect = 1e-13
Identities = 116/157 (74%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| || ||||| || || ||| |||||| | |||||||| || || |||||||| |||
Sbjct 2170863 TCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTG 2170804
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
|| ||| | || | ||| | || || | |||||| ||||||||||||||| ||| |
Sbjct 2170803 TCC-TGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCACCTCAAGGGTGAT 2170745
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| ||||| || | ||||| || || || ||||||
Sbjct 2170744 GGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATA 2170708
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
||||| || | | ||||| || | || | || ||||| ||||| || || || |||
Sbjct 2171394 TGGCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATATTGTAGTCG 2171335
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
| |||| | ||||| ||||| || || ||| |||||| | |||||||| ||
Sbjct 2171334 GAGAGGGTGCGCCCATCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGG 2171275
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714
|| |||||||| ||||| ||| || || | | || | ||||| ||||||||
Sbjct 2171274 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCC 2171215
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||| | || | ||||| || || | ||||| || || || ||||||
Sbjct 2171214 ACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCATA 2171164
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495960942704000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |