Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq9898 632 3e-176 seq11714 132 7e-26 seq11381 120 4e-22 seq9943 107 3e-18 >seq9898 Length=4754808 Score = 632 bits (700), Expect = 3e-176 Identities = 1337/1978 (68%), Gaps = 29/1978 (1%) Strand=Plus/Minus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 ||| ||||||||| | || || | | ||||||| || || |||||||| | | | Sbjct 101400 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATTTCCTCATTCCACAGTCCCCG 101341 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 || || | | | || ||||| || || || | ||||| ||||| || | ||||| Sbjct 101340 TTCAGTCAGGTCCTTGAGCAGATGTGGGTTTACAATCTGAAACTCTCCGGAGAGGACTCT 101281 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || ||||| || | ||| | || ||||| || || | ||||| || Sbjct 101280 GCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCTAGTATTTGTGC 101221 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 || || || || ||||| || |||| ||| | || || || | ||| | | | || Sbjct 101220 TGTGGAAGCAGTAGGCATGGGGGCCAACAACAGGCTGTTCCTCACACCATGTTTAGTAAT 101161 Query 79206 TTTATCTTTTAG-AGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCAT 79264 || || || || || |||| | ||||| || ||| ||| || | ||| | || | Sbjct 101160 CTTCTCCTTAAGCAGCTTCC-AGTCCCAGAGCGCAGTCGGCACCTTCTCCCACATGTCGT 101102 Query 79265 ATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTT 79324 |||| ||||| || ||||| | || |||| |||||| |||||||| || || |||| Sbjct 101101 ATTGCAGAATGCCCTTACTCACTGGAGAACCTGGGTATGTCTCATAAGGCCCGTCTTTTT 101042 Query 79325 CGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTAT 79384 | ||||| || || || ||||| | || |||| || || || || || |||| | | Sbjct 101041 CTGCTAACTCGCAGCTTGCCTCCAGGGCGGCGTAGTATATTGTCTCAAAGATCTGGATGT 100982 Query 79385 TGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 79444 | || || ||||| | || |||||||||||| | |||||| || || ||||| | Sbjct 100981 TCAGCAGCTGGGCTTCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGA 100922 Query 79445 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAA 79504 || || || ||||| ||||| || || || | ||| || || | || ||||| || | Sbjct 100921 GACCCTGCACTCCAATTCCGATTGGCCTGTGGCGCTTGTTCGAGTTCTCGGCTTCAGGGA 100862 Query 79505 TAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACAT 79564 || || || ||||| || || || || ||||| || || || |||||||| ||| Sbjct 100861 CTGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACAG 100802 Query 79565 CCTTTAGTTTGAGAAAATCAAATCGTCC-ATCT---ATTACAAACATGTTCAACGCGACA 79620 || || || ||||| |||| ||| | ||| ||||||| | || | | Sbjct 100801 AGGCAAGCTTTTTGAAGTCAAA-GGTCCGTTCTGGAGTAACATACATGTTAAGAGCAATA 100743 Query 79621 GATGCCAGATTACAAACGGCTACCTCA--TTAGCATCCGCATATTGTATTATTTCAGTGC 79678 || |||| ||||| |||||||||||| || || | | ||| | | || ||||||| Sbjct 100742 GAAGCCAAGTTACAGACGGCTACCTCATCTTTGCTT--GTATACTCCACAATCTCAGTGC 100685 Query 79679 AGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 79738 | | |||||| || || || || || ||||| || ||||||||||| ||||||| |||| Sbjct 100684 ACAAGTTACTGCATTTGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCAT 100625 Query 79739 CCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 79798 | || || | ||| | ||||| || |||||| ||||||| ||||| || || | ||| | Sbjct 100624 CTTTGTACAACATGTAAGGAGTTCCTGTTTCAGTCTGAGACTCTATGATGGCATACCACA 100565 Query 79799 CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTC--TCTT--TCGTATTGTGTATAT 79854 | ||||||| | || || || || | | || | ||||| | || || Sbjct 100564 CCTGCTGAGCCTTGA----CCACCCGTTTCACTCTGCCTTCCTGCTCGTAGCGAGTGTAC 100509 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 | || ||||| || |||||| || || | ||||| || || || |||||| Sbjct 100508 AGCTTCTCAAACTCCTCCCCCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCACATC 100449 Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 79974 || ||||| || | | | || | ||||| || | |||||| ||||| || || Sbjct 100448 AAAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGC- 100390 Query 79975 ATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 80033 ||| || || |||| | || |||||||| || || || ||||| || | || ||||| Sbjct 100389 ATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTTAACTCAAGGAA 100330 Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 | | | ||| | ||||| || || | ||| ||||| | | || |||||||| || Sbjct 100329 GTCAAACACGTCAAAGTGCCATGGCTCAAGGTACATGGCAAAGGCACCAGGTCGTTTATT 100270 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 || || || || | ||| | || ||||| || || || |||| |||||| | || || Sbjct 100269 GCCACCTTGGTCCACGTAGCGCGCCGTGTTGTTGTACACCCTCAGCATTGGCACAAGGCC 100210 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| || ||||||| || || | || |||||||| | | | ||| |||| || Sbjct 100209 ATTTGAATTACCATTTGTTCCAGCAATGTAGCTTCCTGTTGATCTAATGCAGCTAACTGC 100150 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || ||| || || ||||| ||| ||||| | |||||| |||| | |||||||| || Sbjct 100149 TACACCAATCCCTCCTGCAGATTTGGAGATGAGAGCGCATTGTTTGAGTGTATCATAAAT 100090 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 80333 ||| || ||||| ||||| ||||| || || || || ||||| | || | | | Sbjct 100089 GCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAACTAGAGAGCTGTGGTCTGTT 100030 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 || || ||||| || | || ||||| || || || ||||| || |||||||| || || Sbjct 100029 GGTGCCTGCATTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTT 99970 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| |||||||| |||| || ||||| || || ||||| || || || | ||| | Sbjct 99969 GTAGGTCTCAATGGCTGCATCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAG 99910 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||||||| || | ||| | | |||| ||| ||||||| || ||| || || | Sbjct 99909 CATGTGCTGTGGACGCTCAGCCACCTTGCCATTGATTTTCAGCAGGTAGGAGCGCTCTAG 99850 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 || ||||| ||||| | || || ||||| || | || || || ||| | |||||||| Sbjct 99849 GGTCTTAAAGCCAAAGAAATTATAAGAAAAATCCCTATCATAGATTATAGCAGAGTTGAG 99790 Query 80574 TTTATCCTTATATTTGTTA--ACTACATCCATGGTGATACTT--GAAATAATCGGAGAAT 80629 || | | |||| | || | ||| | ||| ||| || || || || || | Sbjct 99789 GCGGTC--TTTGTTTGCAAGGACAATATCTAGGGT--CTCTTGGGAGATCATGGGGGAGT 99734 Query 80630 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 80689 | | ||| ||| || ||||||||||| | ||||||||| || ||||| || | | Sbjct 99733 GGCGCTTGTTTAAAGGGTTGACATAGTTGAACAGATCCTCCATGACGTCACTGAACACCT 99674 Query 80690 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTG 80749 | || || || || || || || || || || || | || || | || ||||||||| | Sbjct 99673 TCTTGGTCTCTTTATGGAGGTTGGAAACAGCAATGCGTGCAGCCAGAAGGGCATAATCGG 99614 Query 80750 GATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTG 80809 | || | || || ||||| || || || || || || |||||||| || || || | Sbjct 99613 GGTGCTTAGTGGTTAGTGTGGCAGCAATCTCCGCAGCGAGTGTGTCCAACTCCACAGTGG 99554 Query 80810 TTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGAT 80869 | |||||| | || | |||||||| |||||||| | |||| || || | | | Sbjct 99553 TCACTCCACTGTACAGACCTTGGATCACCTTCATTGTGATTTGTGCGGGGTCCACAAACT 99494 Query 80870 CAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 80927 | | ||| | || ||||| | ||| || ||||| |||||||||||||||||||| Sbjct 99493 CCGCGTTGAGCCCGTAACAGAGCTTTTGGATTCGAGAGGTGATTTTATCAAACATGAC 99436 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || || || ||||| || || | |||| ||| | || ||||| ||||| |||| Sbjct 101662 TCCAGCCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 101603 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||| || || || || ||| |||| || | |||||||||||| || | || |||| Sbjct 101602 TTAGAGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTGAGTATAGTCT 101543 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 | |||| |||||||||| |||||||| | | || | ||| ||||| Sbjct 101542 TCTGTGATATTTCCCAAACTGTTTTATACAGCTGTTTTAAATCATCTGG 101494 >seq11714 Length=3826745 Score = 132 bits (146), Expect = 7e-26 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 |||| |||||||||||| || | | |||| ||||||||| ||||| || || | ||| Sbjct 1501524 TATGATTCATAAGGTCCATCATGGGCAGCTAGTTCACAACTGGCCTCCAAAGCAGCATAA 1501583 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 || ||||| || ||||||| | ||||||| || |||||| || |||||||||||| Sbjct 1501584 TATATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCTTCTTCACTTTCAAATGGATAA 1501643 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | |||||| || |||||||| | || |||||||| || || |||||||| || | | Sbjct 1501644 CGCATGAGAATGAAGGCGTCTGCAAGACCCTGAACACCGATTCCAATAGGTCTGTGGCGC 1501703 Query 79480 TTATTAGA 79487 | ||||| Sbjct 1501704 ATGTTAGA 1501711 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | ||||| || ||||| ||||||||||| || || || || ||| Sbjct 1503114 GTGCCAGCATTGAACAGTGTAGGGGAGGCGTGAGTAAACCATTTCTCTGAGAGCAGGTTG 1503173 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || |||||||| |||| || | ||| || |||||| || || || || | ||| | | Sbjct 1503174 TAGGTCTCAATGGCTGCGTCCACATCTTGTTTATGAATCCCAACAGCCACTCTCATGAGC 1503233 Query 80455 ATGTGCTGAGGTCTTTCA 80472 || |||||||| || ||| Sbjct 1503234 ATATGCTGAGGCCTCTCA 1503251 >seq11381 Length=12543884 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| |||||| | || || ||||||||||| || | ||||| Sbjct 9286990 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGACCGGGCATTAGACCCCTCTTTT 9286931 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||| | |||| |||||| || ||||| ||||| ||||| ||||| || ||||| | Sbjct 9286930 TCAGCCAATAAATGGCCGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATG 9286871 Query 50102 CAACAAGTCTCTCTCC 50117 | |||| ||| || || Sbjct 9286870 CCACAATTCTTTCACC 9286855 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 50458 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 50517 || || ||||||||||| || ||||||| ||||| || ||||| |||||||||||| | Sbjct 9285224 ACCTCCTCCACTGTCCAGAAGGATGCCTGTGCCTGCTTGTACATTTTCCAGATGTCAGGG 9285165 Query 50518 TATTGGATTGGGAAAATAACAAATCT 50543 || || || |||||||| ||||| || Sbjct 9285164 TAATGTATGGGGAAAATCACAAACCT 9285139 >seq9943 Length=499256 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || ||||||||||| || || ||||||||||| ||||| || || | Sbjct 292078 CCTCGTCTCTGCTGATGAGTTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 292019 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || ||||| |||||||| || || || ||||| || | Sbjct 292018 TGAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATCCCCTCGACAGCGGCGAACG 291959 Query 50102 CAAC 50105 | || Sbjct 291958 CCAC 291955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718119579656800