Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq9898 598 6e-166 seq11714 131 2e-25 seq11381 114 2e-20 seq9943 93.3 6e-14 >seq9898 Length=4754808 Score = 598 bits (662), Expect = 6e-166 Identities = 1333/1994 (67%), Gaps = 27/1994 (1%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||| ||||||||| | ||||| | | |||| || || || |||||||| | | | Sbjct 101400 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATTTCCTCATTCCACAGTCCCCG 101341 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 || || | | | || ||||| || || || | ||||| ||||| || | ||||| Sbjct 101340 TTCAGTCAGGTCCTTGAGCAGATGTGGGTTTACAATCTGAAACTCTCCGGAGAGGACTCT 101281 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| || | ||| | |||||||| || || | ||||| || Sbjct 101280 GCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCTAGTATTTGTGC 101221 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || ||||| ||||| || |||| ||| || || || || | ||||||| || Sbjct 101220 TGTGGAAGCAGTAGGCATGGGGGCCAACAACAGGCTGTTCCTCACACCATGTTTAGTAAT 101161 Query 71289 TTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNN 71347 || || || || || |||| | | ||| || | | || || Sbjct 101160 CTTCTCCTTAAGCAGCTTCC-AGTCCCAGAGCGCAGTCGGCACCTTCTCCCACATGTCGT 101102 Query 71348 NNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTT 71407 ||||| ||||| | || |||| ||||| || || || || ||||||| Sbjct 101101 ATTGCAGAATGCCCTTACTCACTGGAGAACCTGGGTATGTCTCATAAGGCCCGTCTTTTT 101042 Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 | |||| || || || ||||| | || | || || || || || || |||| | | Sbjct 101041 CTGCTAACTCGCAGCTTGCCTCCAGGGCGGCGTAGTATATTGTCTCAAAGATCTGGATGT 100982 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 | || || ||||| || || |||||||||||| | |||||| || || ||||| | Sbjct 100981 TCAGCAGCTGGGCTTCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGA 100922 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 || || || ||||| ||||| || ||||| | ||| || || | || ||||| || | Sbjct 100921 GACCCTGCACTCCAATTCCGATTGGCCTGTGGCGCTTGTTCGAGTTCTCGGCTTCAGGGA 100862 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647 || || || ||||| || || || || ||||| ||||| || |||||||| ||| Sbjct 100861 CTGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACAG 100802 Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCT---ATTACAAACACGTTCAAGGCAACAG 71704 || || || ||||| ||| ||| | ||| ||| ||| | |||| || Sbjct 100801 AGGCAAGCTTTTTGAAGTCAAAGGTCCGTTCTGGAGTAACATACATGTTAAGAGCAATAG 100742 Query 71705 ATGCCAGATTACAAACGGCTACCTCA--TTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 | |||| ||||| |||||||||||| || || | | ||| | | ||| |||||||| Sbjct 100741 AAGCCAAGTTACAGACGGCTACCTCATCTTTGCTT--GTATACTCCACAATCTCAGTGCA 100684 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 | ||||| || ||||| || || ||||| || ||||||||||| ||||||| ||||| Sbjct 100683 CAAGTTACTGCATTTGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCATC 100624 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 || || | || | ||||| || |||||| ||||||| ||||| || || | ||| || Sbjct 100623 TTTGTACAACATGTAAGGAGTTCCTGTTTCAGTCTGAGACTCTATGATGGCATACCACAC 100564 Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC--TCTT--TCGTATTGTGTATATA 71938 ||||||| | | | || || || | | || | ||||| | || || | Sbjct 100563 CTGCTGAGCCTTGACCA----CCCGTTTCACTCTGCCTTCCTGCTCGTAGCGAGTGTACA 100508 Query 71939 ATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCA 71998 || ||||| || |||||| | || | ||||| || ||| | || ||||||| Sbjct 100507 GCTTCTCAAACTCCTCCCCCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCA 100448 Query 71999 ATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 72058 | ||||| || | | | || | ||||| || | |||||| ||||| || || | Sbjct 100447 AAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGC-A 100389 Query 72059 TA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 72117 || || || |||| | || |||||||| || || || ||||| || | || ||||| Sbjct 100388 TAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTTAACTCAAGGAAG 100329 Query 72118 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTT 72177 | | | ||| | ||||| || || | ||| ||||| | | || || ||||| || Sbjct 100328 TCAAACACGTCAAAGTGCCATGGCTCAAGGTACATGGCAAAGGCACCAGGTCGTTTATTG 100269 Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || || || | ||| | || ||||| || || || |||| |||||| | || ||| Sbjct 100268 CCACCTTGGTCCACGTAGCGCGCCGTGTTGTTGTACACCCTCAGCATTGGCACAAGGCCA 100209 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || || |||||| || || | || |||||||| | | | ||| ||||| || | Sbjct 100208 TTTGAATTACCATTTGTTCCAGCAATGTAGCTTCCTGTTGATCTAATGCAGCTAACTGCT 100149 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| || || ||||| ||| ||||| | |||||| |||| | |||||||| ||| Sbjct 100148 ACACCAATCCCTCCTGCAGATTTGGAGATGAGAGCGCATTGTTTGAGTGTATCATAAATG 100089 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 72417 || || || || |||||| ||||| || || || || ||||| | || | | | Sbjct 100088 CCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAACTAGAGAGCTGTGGTCTGTTG 100029 Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | || ||||| || || || ||||| || |||||||| || ||| Sbjct 100028 GTGCCTGCATTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTG 99969 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || |||||||| |||| || ||||| || || ||||| || || || | ||| | | Sbjct 99968 TAGGTCTCAATGGCTGCATCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAGC 99909 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 || ||||| || | ||| | | |||| ||| ||||||| || |||||| || | Sbjct 99908 ATGTGCTGTGGACGCTCAGCCACCTTGCCATTGATTTTCAGCAGGTAGGAGCGCTCTAGG 99849 Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGT 72657 || ||||| ||||| | || || ||||| || | || || || ||| | || ||||| Sbjct 99848 GTCTTAAAGCCAAAGAAATTATAAGAAAAATCCCTATCATAGATTATAGCAGAGTTGAGG 99789 Query 72658 TTATCCTTATATTTGTTA--ACTATATCCATGGTGATACTT--GAAATAATCGGAGAATG 72713 || | | |||| | || ||||| | ||| ||| || || || || || || Sbjct 99788 CGGTC--TTTGTTTGCAAGGACAATATCTAGGGT--CTCTTGGGAGATCATGGGGGAGTG 99733 Query 72714 TTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 72773 | ||| ||| || ||||||||||| | ||||||||| || ||||| || | || Sbjct 99732 GCGCTTGTTTAAAGGGTTGACATAGTTGAACAGATCCTCCATGACGTCACTGAACACCTT 99673 Query 72774 ttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGG 72833 || || || || || || || || || || || | || || |||| ||||||||| || Sbjct 99672 CTTGGTCTCTTTATGGAGGTTGGAAACAGCAATGCGTGCAGCCAGAAGGGCATAATCGGG 99613 Query 72834 ATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGT 72893 || | || || ||||| || || || || || || |||||||| || || || || Sbjct 99612 GTGCTTAGTGGTTAGTGTGGCAGCAATCTCCGCAGCGAGTGTGTCCAACTCCACAGTGGT 99553 Query 72894 TACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 72953 |||||| | || | |||||||| |||||||| | |||| || || | | || Sbjct 99552 CACTCCACTGTACAGACCTTGGATCACCTTCATTGTGATTTGTGCGGGGTCCACAAACTC 99493 Query 72954 AGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATAACATT 73013 | ||| | || ||||| | ||| || ||||| ||||||||||||||||| || Sbjct 99492 CGCGTTGAGCCCGTAACAGAGCTTTTGGATTCGAGAGGTGATTTTATCAAACATGACGCG 99433 Query 73014 TTCCCGGCATCCAT 73027 ||| ||| ||||| Sbjct 99432 CTCCTGGCGTCCAT 99419 Score = 107 bits (118), Expect = 3e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || ||||| ||||| || || | |||| |||| | || || || || ||||||| Sbjct 101662 TCCAGCCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 101603 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| || || || ||| |||| || | |||||||||||| || | || |||| Sbjct 101602 TTAGAGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTGAGTATAGTCT 101543 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | |||| |||||||||| |||||||| | | || | ||| ||||| Sbjct 101542 TCTGTGATATTTCCCAAACTGTTTTATACAGCTGTTTTAAATCATCTGG 101494 >seq11714 Length=3826745 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || || ||||||| || || ||||| || | | |||||||||||||| ||||| || Sbjct 1501515 GAGCCAGCATATGATTCATAAGGTCCATCATGGGCAGCTAGTTCACAACTGGCCTCCAAA 1501574 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 || ||||||| ||||| || ||||||| | ||||||| || ||||| || ||| Sbjct 1501575 GCAGCATAATATATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCTTCTTCACTTTCA 1501634 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 ||||||||| | |||||| || |||||||| | || ||||| || || || |||||| Sbjct 1501635 AATGGATAACGCATGAGAATGAAGGCGTCTGCAAGACCCTGAACACCGATTCCAATAGGT 1501694 Query 71554 CTGTGTCTCTTATTAGA 71570 ||||| | | | ||||| Sbjct 1501695 CTGTGGCGCATGTTAGA 1501711 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | ||||| || ||||| ||||||||||| || || || || ||| Sbjct 1503114 GTGCCAGCATTGAACAGTGTAGGGGAGGCGTGAGTAAACCATTTCTCTGAGAGCAGGTTG 1503173 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || |||||||| |||| || | ||| || ||| || || || || || | ||| | | Sbjct 1503174 TAGGTCTCAATGGCTGCGTCCACATCTTGTTTATGAATCCCAACAGCCACTCTCATGAGC 1503233 Query 72538 ATATGCTGAGGTCTTTCA 72555 ||||||||||| || ||| Sbjct 1503234 ATATGCTGAGGCCTCTCA 1503251 >seq11381 Length=12543884 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| |||||| | || || ||||||||||| || | ||||| Sbjct 9286990 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGACCGGGCATTAGACCCCTCTTTT 9286931 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||| | || | |||||| |||||||| ||||| ||||| ||||| || ||||| | Sbjct 9286930 TCAGCCAATAAATGGCCGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATG 9286871 Query 42207 CAATAAGTCTCTCTCC 42222 | | || ||| || || Sbjct 9286870 CCACAATTCTTTCACC 9286855 >seq9943 Length=499256 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | ||||||||| || || ||||||||||| ||||| || || | Sbjct 292078 CCTCGTCTCTGCTGATGAGTTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 292019 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || |||||||| |||||||| || || || || || || | Sbjct 292018 TGAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATCCCCTCGACAGCGGCGAACG 291959 Query 42207 C 42207 | Sbjct 291958 C 291958 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 ||||| | || || ||||| | ||||| ||||| ||||| || ||||| || ||||| Sbjct 291144 TCTTTGATGTAGGTGTCGATGAGCAGACTGTACATCTCTGAGTGGATGTTCTCCATGGCG 291085 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||| || || ||||||||||||||||| || ||||| || || Sbjct 291084 ATCTGGAACCCATAGAAACATCTGGCCTCCGTCACCTGCACCTC 291041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670999770831200