Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq9898 598 6e-166
seq11714 131 2e-25
seq11381 114 2e-20
seq9943 93.3 6e-14
>seq9898
Length=4754808
Score = 598 bits (662), Expect = 6e-166
Identities = 1333/1994 (67%), Gaps = 27/1994 (1%)
Strand=Plus/Minus
Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108
||| ||||||||| | ||||| | | |||| || || || |||||||| | | |
Sbjct 101400 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATTTCCTCATTCCACAGTCCCCG 101341
Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168
|| || | | | || ||||| || || || | ||||| ||||| || | |||||
Sbjct 101340 TTCAGTCAGGTCCTTGAGCAGATGTGGGTTTACAATCTGAAACTCTCCGGAGAGGACTCT 101281
Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228
|| ||||| || || ||||| || | ||| | |||||||| || || | ||||| ||
Sbjct 101280 GCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCTAGTATTTGTGC 101221
Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288
|| || ||||| ||||| || |||| ||| || || || || | ||||||| ||
Sbjct 101220 TGTGGAAGCAGTAGGCATGGGGGCCAACAACAGGCTGTTCCTCACACCATGTTTAGTAAT 101161
Query 71289 TTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNN 71347
|| || || || || |||| | | ||| || | | || ||
Sbjct 101160 CTTCTCCTTAAGCAGCTTCC-AGTCCCAGAGCGCAGTCGGCACCTTCTCCCACATGTCGT 101102
Query 71348 NNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTT 71407
||||| ||||| | || |||| ||||| || || || || |||||||
Sbjct 101101 ATTGCAGAATGCCCTTACTCACTGGAGAACCTGGGTATGTCTCATAAGGCCCGTCTTTTT 101042
Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467
| |||| || || || ||||| | || | || || || || || || |||| | |
Sbjct 101041 CTGCTAACTCGCAGCTTGCCTCCAGGGCGGCGTAGTATATTGTCTCAAAGATCTGGATGT 100982
Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527
| || || ||||| || || |||||||||||| | |||||| || || ||||| |
Sbjct 100981 TCAGCAGCTGGGCTTCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGA 100922
Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587
|| || || ||||| ||||| || ||||| | ||| || || | || ||||| || |
Sbjct 100921 GACCCTGCACTCCAATTCCGATTGGCCTGTGGCGCTTGTTCGAGTTCTCGGCTTCAGGGA 100862
Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647
|| || || ||||| || || || || ||||| ||||| || |||||||| |||
Sbjct 100861 CTGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACAG 100802
Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCT---ATTACAAACACGTTCAAGGCAACAG 71704
|| || || ||||| ||| ||| | ||| ||| ||| | |||| ||
Sbjct 100801 AGGCAAGCTTTTTGAAGTCAAAGGTCCGTTCTGGAGTAACATACATGTTAAGAGCAATAG 100742
Query 71705 ATGCCAGATTACAAACGGCTACCTCA--TTAGCATCGGCATATTGTATAATTTCAGTGCA 71762
| |||| ||||| |||||||||||| || || | | ||| | | ||| ||||||||
Sbjct 100741 AAGCCAAGTTACAGACGGCTACCTCATCTTTGCTT--GTATACTCCACAATCTCAGTGCA 100684
Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822
| ||||| || ||||| || || ||||| || ||||||||||| ||||||| |||||
Sbjct 100683 CAAGTTACTGCATTTGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCATC 100624
Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882
|| || | || | ||||| || |||||| ||||||| ||||| || || | ||| ||
Sbjct 100623 TTTGTACAACATGTAAGGAGTTCCTGTTTCAGTCTGAGACTCTATGATGGCATACCACAC 100564
Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC--TCTT--TCGTATTGTGTATATA 71938
||||||| | | | || || || | | || | ||||| | || || |
Sbjct 100563 CTGCTGAGCCTTGACCA----CCCGTTTCACTCTGCCTTCCTGCTCGTAGCGAGTGTACA 100508
Query 71939 ATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCA 71998
|| ||||| || |||||| | || | ||||| || ||| | || |||||||
Sbjct 100507 GCTTCTCAAACTCCTCCCCCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCA 100448
Query 71999 ATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 72058
| ||||| || | | | || | ||||| || | |||||| ||||| || || |
Sbjct 100447 AAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGC-A 100389
Query 72059 TA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 72117
|| || || |||| | || |||||||| || || || ||||| || | || |||||
Sbjct 100388 TAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTTAACTCAAGGAAG 100329
Query 72118 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTT 72177
| | | ||| | ||||| || || | ||| ||||| | | || || ||||| ||
Sbjct 100328 TCAAACACGTCAAAGTGCCATGGCTCAAGGTACATGGCAAAGGCACCAGGTCGTTTATTG 100269
Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237
|| || || || | ||| | || ||||| || || || |||| |||||| | || |||
Sbjct 100268 CCACCTTGGTCCACGTAGCGCGCCGTGTTGTTGTACACCCTCAGCATTGGCACAAGGCCA 100209
Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297
|| || |||||| || || | || |||||||| | | | ||| ||||| || |
Sbjct 100208 TTTGAATTACCATTTGTTCCAGCAATGTAGCTTCCTGTTGATCTAATGCAGCTAACTGCT 100149
Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357
| ||| || || ||||| ||| ||||| | |||||| |||| | |||||||| |||
Sbjct 100148 ACACCAATCCCTCCTGCAGATTTGGAGATGAGAGCGCATTGTTTGAGTGTATCATAAATG 100089
Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 72417
|| || || || |||||| ||||| || || || || ||||| | || | | |
Sbjct 100088 CCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAACTAGAGAGCTGTGGTCTGTTG 100029
Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477
|| || ||||| || | || ||||| || || || ||||| || |||||||| || |||
Sbjct 100028 GTGCCTGCATTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTG 99969
Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537
|| |||||||| |||| || ||||| || || ||||| || || || | ||| | |
Sbjct 99968 TAGGTCTCAATGGCTGCATCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAGC 99909
Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597
|| ||||| || | ||| | | |||| ||| ||||||| || |||||| || |
Sbjct 99908 ATGTGCTGTGGACGCTCAGCCACCTTGCCATTGATTTTCAGCAGGTAGGAGCGCTCTAGG 99849
Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGT 72657
|| ||||| ||||| | || || ||||| || | || || || ||| | || |||||
Sbjct 99848 GTCTTAAAGCCAAAGAAATTATAAGAAAAATCCCTATCATAGATTATAGCAGAGTTGAGG 99789
Query 72658 TTATCCTTATATTTGTTA--ACTATATCCATGGTGATACTT--GAAATAATCGGAGAATG 72713
|| | | |||| | || ||||| | ||| ||| || || || || || ||
Sbjct 99788 CGGTC--TTTGTTTGCAAGGACAATATCTAGGGT--CTCTTGGGAGATCATGGGGGAGTG 99733
Query 72714 TTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 72773
| ||| ||| || ||||||||||| | ||||||||| || ||||| || | ||
Sbjct 99732 GCGCTTGTTTAAAGGGTTGACATAGTTGAACAGATCCTCCATGACGTCACTGAACACCTT 99673
Query 72774 ttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGG 72833
|| || || || || || || || || || || | || || |||| ||||||||| ||
Sbjct 99672 CTTGGTCTCTTTATGGAGGTTGGAAACAGCAATGCGTGCAGCCAGAAGGGCATAATCGGG 99613
Query 72834 ATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGT 72893
|| | || || ||||| || || || || || || |||||||| || || || ||
Sbjct 99612 GTGCTTAGTGGTTAGTGTGGCAGCAATCTCCGCAGCGAGTGTGTCCAACTCCACAGTGGT 99553
Query 72894 TACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 72953
|||||| | || | |||||||| |||||||| | |||| || || | | ||
Sbjct 99552 CACTCCACTGTACAGACCTTGGATCACCTTCATTGTGATTTGTGCGGGGTCCACAAACTC 99493
Query 72954 AGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATAACATT 73013
| ||| | || ||||| | ||| || ||||| ||||||||||||||||| ||
Sbjct 99492 CGCGTTGAGCCCGTAACAGAGCTTTTGGATTCGAGAGGTGATTTTATCAAACATGACGCG 99433
Query 73014 TTCCCGGCATCCAT 73027
||| ||| |||||
Sbjct 99432 CTCCTGGCGTCCAT 99419
Score = 107 bits (118), Expect = 3e-18
Identities = 125/169 (74%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927
|||| || ||||| ||||| || || | |||| |||| | || || || || |||||||
Sbjct 101662 TCCAGCCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 101603
Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987
| | ||||| || || || ||| |||| || | |||||||||||| || | || ||||
Sbjct 101602 TTAGAGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTGAGTATAGTCT 101543
Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036
| |||| |||||||||| |||||||| | | || | ||| |||||
Sbjct 101542 TCTGTGATATTTCCCAAACTGTTTTATACAGCTGTTTTAAATCATCTGG 101494
>seq11714
Length=3826745
Score = 131 bits (144), Expect = 2e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433
|| || ||||||| || || ||||| || | | |||||||||||||| ||||| ||
Sbjct 1501515 GAGCCAGCATATGATTCATAAGGTCCATCATGGGCAGCTAGTTCACAACTGGCCTCCAAA 1501574
Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493
|| ||||||| ||||| || ||||||| | ||||||| || ||||| || |||
Sbjct 1501575 GCAGCATAATATATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCTTCTTCACTTTCA 1501634
Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553
||||||||| | |||||| || |||||||| | || ||||| || || || ||||||
Sbjct 1501635 AATGGATAACGCATGAGAATGAAGGCGTCTGCAAGACCCTGAACACCGATTCCAATAGGT 1501694
Query 71554 CTGTGTCTCTTATTAGA 71570
||||| | | | |||||
Sbjct 1501695 CTGTGGCGCATGTTAGA 1501711
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477
|| || ||||| || | ||||| || ||||| ||||||||||| || || || || |||
Sbjct 1503114 GTGCCAGCATTGAACAGTGTAGGGGAGGCGTGAGTAAACCATTTCTCTGAGAGCAGGTTG 1503173
Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537
|| |||||||| |||| || | ||| || ||| || || || || || | ||| | |
Sbjct 1503174 TAGGTCTCAATGGCTGCGTCCACATCTTGTTTATGAATCCCAACAGCCACTCTCATGAGC 1503233
Query 72538 ATATGCTGAGGTCTTTCA 72555
||||||||||| || |||
Sbjct 1503234 ATATGCTGAGGCCTCTCA 1503251
>seq11381
Length=12543884
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| || || | ||| |||||| | || || ||||||||||| || | |||||
Sbjct 9286990 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGACCGGGCATTAGACCCCTCTTTT 9286931
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| |||||| | || | |||||| |||||||| ||||| ||||| ||||| || ||||| |
Sbjct 9286930 TCAGCCAATAAATGGCCGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATG 9286871
Query 42207 CAATAAGTCTCTCTCC 42222
| | || ||| || ||
Sbjct 9286870 CCACAATTCTTTCACC 9286855
>seq9943
Length=499256
Score = 93.3 bits (102), Expect = 6e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| ||||| || || | ||||||||| || || ||||||||||| ||||| || || |
Sbjct 292078 CCTCGTCTCTGCTGATGAGTTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 292019
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| || || | || || |||||||| |||||||| || || || || || || |
Sbjct 292018 TGAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATCCCCTCGACAGCGGCGAACG 291959
Query 42207 C 42207
|
Sbjct 291958 C 291958
Score = 89.7 bits (98), Expect = 7e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385
||||| | || || ||||| | ||||| ||||| ||||| || ||||| || |||||
Sbjct 291144 TCTTTGATGTAGGTGTCGATGAGCAGACTGTACATCTCTGAGTGGATGTTCTCCATGGCG 291085
Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429
||||| || || ||||||||||||||||| || ||||| || ||
Sbjct 291084 ATCTGGAACCCATAGAAACATCTGGCCTCCGTCACCTGCACCTC 291041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670999770831200
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