Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq9898 141 1e-28 seq9943 89.7 8e-13 >seq9898 Length=4754808 Score = 141 bits (156), Expect = 1e-28 Identities = 348/522 (67%), Gaps = 18/522 (3%) Strand=Plus/Plus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACG 96865 |||||| || || | | |||||| ||||||||||| || ||||||| | | | || Sbjct 100191 AACAAATGGTAATTCAAATGGCCTTGTGCCAATGCTGAGGGTGTACAACAACACGGCGCG 100250 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| || || ||||||||||| || || || | ||| | ||| | || || || Sbjct 100251 CTACGTGGACCAAGGTGGCAATAAACGACCTGGTGCCTTTGCCATGTACCTTGAGCCATG 100310 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAG--GCA 96983 |||| ||||| |||||||| | ||| | || ||| |||| | ||||| ||| Sbjct 100311 GCACTTTGACGTGTTTGACTTCCTTGAGTTAAAGAAGAACACTGG---TAAAGAGGAGCA 100367 Query 96984 -CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--- 97039 | || | ||| | || ||||| || ||| | || ||||||||||||||| | || Sbjct 100368 GAGGGCACGAGACCTCTTCTATGCCCTATGGATCCCTGATTTGTTCATGAAGAGGGTGGA 100427 Query 97040 CAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTG 97099 ||| || | ||||| | ||||||||| || || || ||| || || Sbjct 100428 AAACAACCAGG---ACTGGTCTTTGATGTGCCCCAGTGAGTGCCCTGGGCTGGATGAGTG 100484 Query 97100 CTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAG 97159 ||||| || ||||||||| |||||| ||||||||| || ||| || |||| Sbjct 100485 TTGGGGGGAGGAGTTTGAGAAGCTGTACACTCGCTACGAGCAGGAAGGCAGA---GTGAA 100541 Query 97160 ACG---AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGG 97216 ||| ||| | || | | ||||| | |||||| | | ||||| || || || Sbjct 100542 ACGGGTGGTCAAGGCTCAGCAGGTGTGGTATGCCATCATAGAGTCTCAGACTGAAACAGG 100601 Query 97217 AACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGG 97276 |||||| ||||| | ||||| ||| || || | || || || || | | ||||| Sbjct 100602 AACTCCTTACATGTTGTACAAAGATGCCTGTAACAGGAAGAGTAATCAGCAGAATTTGGG 100661 Query 97277 CACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTA 97318 ||| ||||| || || ||||||| || ||||| ||||| Sbjct 100662 CACTATCAAATGCAGTAACTTGTGCACTGAGATTGTGGAGTA 100703 >seq9943 Length=499256 Score = 89.7 bits (98), Expect = 8e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 ||||||| |||||||| || ||||| |||||||| || || || || ||||| || | Sbjct 291953 TGGTGGCGTTCGCCGCTGTCGAGGGGATCTTCTTCTCTGGATCCTTCGCCGCCATTTTCT 292012 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||||||||| || || || |||||||||||||| Sbjct 292013 GGCTCAAGAAACGAGGCCTGATGCCCGGACTGAC 292046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740905244951200