Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq9898 141 1e-28
seq9943 89.7 8e-13
>seq9898
Length=4754808
Score = 141 bits (156), Expect = 1e-28
Identities = 348/522 (67%), Gaps = 18/522 (3%)
Strand=Plus/Plus
Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACG 96865
|||||| || || | | |||||| ||||||||||| || ||||||| | | | ||
Sbjct 100191 AACAAATGGTAATTCAAATGGCCTTGTGCCAATGCTGAGGGTGTACAACAACACGGCGCG 100250
Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925
||||| || || ||||||||||| || || || | ||| | ||| | || || ||
Sbjct 100251 CTACGTGGACCAAGGTGGCAATAAACGACCTGGTGCCTTTGCCATGTACCTTGAGCCATG 100310
Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAG--GCA 96983
|||| ||||| |||||||| | ||| | || ||| |||| | ||||| |||
Sbjct 100311 GCACTTTGACGTGTTTGACTTCCTTGAGTTAAAGAAGAACACTGG---TAAAGAGGAGCA 100367
Query 96984 -CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--- 97039
| || | ||| | || ||||| || ||| | || ||||||||||||||| | ||
Sbjct 100368 GAGGGCACGAGACCTCTTCTATGCCCTATGGATCCCTGATTTGTTCATGAAGAGGGTGGA 100427
Query 97040 CAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTG 97099
||| || | ||||| | ||||||||| || || || ||| || ||
Sbjct 100428 AAACAACCAGG---ACTGGTCTTTGATGTGCCCCAGTGAGTGCCCTGGGCTGGATGAGTG 100484
Query 97100 CTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAG 97159
||||| || ||||||||| |||||| ||||||||| || ||| || ||||
Sbjct 100485 TTGGGGGGAGGAGTTTGAGAAGCTGTACACTCGCTACGAGCAGGAAGGCAGA---GTGAA 100541
Query 97160 ACG---AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGG 97216
||| ||| | || | | ||||| | |||||| | | ||||| || || ||
Sbjct 100542 ACGGGTGGTCAAGGCTCAGCAGGTGTGGTATGCCATCATAGAGTCTCAGACTGAAACAGG 100601
Query 97217 AACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGG 97276
|||||| ||||| | ||||| ||| || || | || || || || | | |||||
Sbjct 100602 AACTCCTTACATGTTGTACAAAGATGCCTGTAACAGGAAGAGTAATCAGCAGAATTTGGG 100661
Query 97277 CACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTA 97318
||| ||||| || || ||||||| || ||||| |||||
Sbjct 100662 CACTATCAAATGCAGTAACTTGTGCACTGAGATTGTGGAGTA 100703
>seq9943
Length=499256
Score = 89.7 bits (98), Expect = 8e-13
Identities = 76/94 (81%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487
||||||| |||||||| || ||||| |||||||| || || || || ||||| || |
Sbjct 291953 TGGTGGCGTTCGCCGCTGTCGAGGGGATCTTCTTCTCTGGATCCTTCGCCGCCATTTTCT 292012
Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521
|||||||||| || || || ||||||||||||||
Sbjct 292013 GGCTCAAGAAACGAGGCCTGATGCCCGGACTGAC 292046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740905244951200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |