Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq10290 185 2e-41
seq11085 132 1e-25
seq13501 86.0 1e-11
seq1 86.0 1e-11
>seq10290
Length=4455921
Score = 185 bits (204), Expect = 2e-41
Identities = 179/230 (78%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| || | || || ||||| | || |||||||||||||| || ||||||
Sbjct 2171166 ATACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCA 2171107
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | |||||||| || || || || |||||||| |||||||| ||||| ||
Sbjct 2171106 GACAGAGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGG 2171047
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||||||||| || || ||||| || | ||| ||||| || ||
Sbjct 2171046 GGAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCC 2170987
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| | || || ||||| ||||| || ||||| ||||| ||||||||
Sbjct 2170986 ACCTCCAAAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2170937
Score = 170 bits (188), Expect = 4e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| || || || | ||| || ||||| | || ||||||||||| || || ||||||||
Sbjct 2173310 CCACCCCTGAGACGAAGAACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 2173251
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
||||| | |||||||| || || ||||||||||| || | |||||| ||||| || ||
Sbjct 2173250 AGAGTACGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGGGGA 2173191
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| ||||| || ||||| ||||| || || || || || | ||| || || || || |||
Sbjct 2173190 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 2173131
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || ||||| ||||| || ||||| ||||| ||||||||
Sbjct 2173130 TCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2173084
Score = 161 bits (178), Expect = 2e-34
Identities = 176/234 (75%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| || | || || ||||| | || ||||||||||| || || ||||||
Sbjct 2170938 ATACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCA 2170879
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || || || || || || || ||||| || | |||||| ||||| ||
Sbjct 2170878 GAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGG 2170819
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||||||||| || || |||||||| | || ||||| || ||
Sbjct 2170818 GGAATGCCTTCCTTGTCCTGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCC 2170759
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
||||| || || || || || ||||| || ||||| ||||| |||||||| |||
Sbjct 2170758 ACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATTG 2170705
Score = 158 bits (174), Expect = 3e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| || | || |||| || | || ||||||||||| || || |||||
Sbjct 2173085 ATACCACCTCTGAGGCGCAGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCG 2173026
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || || || || || || ||||||||||| ||||| |||||||| ||
Sbjct 2173025 GAGAGGGTACGCCCATCCTCAAGCTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGG 2172966
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||||||||| ||||| || ||||| | ||| || || || ||
Sbjct 2172965 GGAATGCCTTCCTTGTCCTGAATCTTAGCTTTCACGTTTTCAATGGTGTCACTGGGCTCA 2172906
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || |||||||| || || || || || || ||||| || |||||
Sbjct 2172905 ACCTCAAGGGTAATAGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 2172856
>seq11085
Length=328877
Score = 132 bits (146), Expect = 1e-25
Identities = 151/200 (76%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| ||||| || || ||||| || || || ||||||||| || || || |||
Sbjct 148038 GTGGATTCCTTCTGCATGTTGTAGTCTGAGAGGGTATGACCGTCTTCAAGCTGCTTACCA 147979
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| || ||||| || |||||||| || ||||||| |||| |||||||| ||
Sbjct 147978 GCAAAAATCAGTCTCTGCTGGTCAGGAGGAATATCTTCTTTGCCCTGGATCTTTGCCTTA 147919
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||||||| | ||| || |||| ||| |||| | || || || || | || || ||
Sbjct 147918 ACATTTTCAATGGTGTCACTAGATTCCACCTGCAACGTGAT-GTTTTTTCGGTCAGGGTC 147860
Query 104543 TTTACAAATATCTGCATTTT 104562
|| ||||| | |||||||||
Sbjct 147859 TTGACAAAGA-CTGCATTTT 147841
>seq13501
Length=12216461
Score = 86.0 bits (94), Expect = 1e-11
Identities = 116/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 78487 AGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCAT 78546
||| || |||||||| | | |||| ||||| || |||||||| || || | || |||||
Sbjct 6011652 AGCCTTGTGGTGGTACTTTGTCTCCAAAGGTATTGAATACCTGGACACAGTGTTTTTCAT 6011593
Query 78547 CCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTT 78606
|| | || || || || || | | || | ||||| || || || | || |||||
Sbjct 6011592 TCTGAGGAAAAAGTTCAACCAGGTGACCTTCTTGCATGTGTACCACCACTGCACCATGTT 6011533
Query 78607 TACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648
||| || | ||||| || || |||||| | |||||||||||
Sbjct 6011532 CACTCTGTGGTGGATTGGCATCAAATGGGTGGCAGGAGGACA 6011491
>seq1
Length=17765049
Score = 86.0 bits (94), Expect = 1e-11
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553
|||||||| || |||||||||||| | || | | || ||| | || ||||| | |
Sbjct 7548976 TGGTGGTACTACATCTCTAAAGGAGTGGAGTTTTTGGACACTGTATTTTTCATTTTGAGG 7548917
Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613
|| || || || ||| | |||||| |||| || || ||||| | || ||||| | |||
Sbjct 7548916 AAAAAGTTCAACCAAGTCAGTTTTTTACACGTCTACCATCACTGCACCATGTTCATCTTG 7548857
Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648
| ||||| || || |||||| || | ||||||||
Sbjct 7548856 TGGTGGATTGGCATCAAATGGGTCCCCGGAGGACA 7548822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151153216906960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |