Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq10290 96.9 3e-15 >seq10290 Length=4455921 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCT 48581 ||| || ||| || || ||||||||||| |||| || | || || |||| || |||| Sbjct 2171140 ATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGGC-CGTCTTCGAGCT 2171082 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| ||| | |||| | | ||||||||| || | | |||||||||| ||| | Sbjct 2171081 GCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCT 2171022 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||| | | | | ||||| ||| | | |||| ||| | || ||||| || || | Sbjct 2171021 TGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAAGTGATGGTCTTCCCAG 2170962 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 |||| ||||||||||| |||||||| Sbjct 2170961 TGAGGGTTTTCACAAAGATCTGCAT 2170937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421165872936620