Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq11603 134 2e-26 seq8213 95.1 2e-14 >seq11603 Length=3851240 Score = 134 bits (148), Expect = 2e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||| ||| | || ||||| | || ||||| ||||| || |||||||| | |||||| Sbjct 1964547 TTGATGATGTCGAAGCCCACCTGGCCTCCGAAAGTGCTTGGCTTCCAGTATTCAGGGGAG 1964488 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| |||| ||||||||||||||||||| || || || |||| || | ||| || Sbjct 1964487 CAGATGGCGTTTCCCATGAGGCCTTTGAGGGAGAAGGGTGCTCCCATTTCCACCATGGTC 1964428 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || ||||| |||||||| | |||||| || |||| | || | ||||| |||||| Sbjct 1964427 TCCCCGAAAATGGCGTTCTCTCTGGGCTTCTCGACCAGCAGACCCGGGTACAGCTCCACG 1964368 Query 8921 GCCTCGATGTCTCCGTA 8937 || || | || |||||| Sbjct 1964367 GCGTCCACGTGTCCGTA 1964351 Score = 116 bits (128), Expect = 5e-21 Identities = 135/181 (75%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 9671 CTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCA 9730 ||| ||| || || || || |||| ||||||||| | |||||||| ||||||||||||| Sbjct 1961598 CTCCTTT-AGCACGTCACATACTCGGTTGTGTTCACGAAGCCAGATGGTAGCGTACATCA 1961540 Query 9731 TGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCA 9790 |||||||||| |||||||||||||| || || || || || | | | || || | Sbjct 1961539 TGAGACCAGGGACCAGGCCAAAAGCTTCATGCCCCACTGCAAACCTCTGGGACTCTGGGA 1961480 Query 9791 CTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCAC 9850 | | |||||||||| ||||| ||| ||| || || || | ||||| ||||| || | Sbjct 1961479 CATGGGGAGGATAGTGCATGTCCACACCGACCTCCTTCACTGTCGGGGGGTACATCTCTC 1961420 Query 9851 C 9851 | Sbjct 1961419 C 1961419 >seq8213 Length=7130527 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 |||||| || || || |||| || || | || || || ||||| ||||||||||| Sbjct 3304015 GTTGCAGAATTCACTATGTCAAATCCAACTTTGCCTCCAAATGTGCTTGGTTTCCAGTAC 3304074 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 || || || ||| |||| ||| || ||||| |||||||| |||||||||| ||| Sbjct 3304075 GTGGGAGAACATATGGGGTTCCCCAATAGTCCTTTCAGGGAAAAGGGAGCCCCCATCTCC 3304134 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | |||||||| || || || || ||||| | || |||| || | |||| || Sbjct 3304135 ACCATGCTCTCTCCAAATATTGCTCCTGGACGTGTTTTCTCCAACAGTAGACCGGGATAA 3304194 Query 8912 AACTCCACAGCCTCGATGTCTCCGT 8936 || |||| ||| | ||||| |||| Sbjct 3304195 AATTCCAGAGCATTTATGTCACCGT 3304219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708377603972800