Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq11603 134 2e-26
seq8213 95.1 2e-14
>seq11603
Length=3851240
Score = 134 bits (148), Expect = 2e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800
|||| ||| | || ||||| | || ||||| ||||| || |||||||| | ||||||
Sbjct 1964547 TTGATGATGTCGAAGCCCACCTGGCCTCCGAAAGTGCTTGGCTTCCAGTATTCAGGGGAG 1964488
Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860
|||||| |||| ||||||||||||||||||| || || || |||| || | ||| ||
Sbjct 1964487 CAGATGGCGTTTCCCATGAGGCCTTTGAGGGAGAAGGGTGCTCCCATTTCCACCATGGTC 1964428
Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920
|| ||||| |||||||| | |||||| || |||| | || | ||||| ||||||
Sbjct 1964427 TCCCCGAAAATGGCGTTCTCTCTGGGCTTCTCGACCAGCAGACCCGGGTACAGCTCCACG 1964368
Query 8921 GCCTCGATGTCTCCGTA 8937
|| || | || ||||||
Sbjct 1964367 GCGTCCACGTGTCCGTA 1964351
Score = 116 bits (128), Expect = 5e-21
Identities = 135/181 (75%), Gaps = 1/181 (1%)
Strand=Plus/Minus
Query 9671 CTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCA 9730
||| ||| || || || || |||| ||||||||| | |||||||| |||||||||||||
Sbjct 1961598 CTCCTTT-AGCACGTCACATACTCGGTTGTGTTCACGAAGCCAGATGGTAGCGTACATCA 1961540
Query 9731 TGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCA 9790
|||||||||| |||||||||||||| || || || || || | | | || || |
Sbjct 1961539 TGAGACCAGGGACCAGGCCAAAAGCTTCATGCCCCACTGCAAACCTCTGGGACTCTGGGA 1961480
Query 9791 CTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCAC 9850
| | |||||||||| ||||| ||| ||| || || || | ||||| ||||| || |
Sbjct 1961479 CATGGGGAGGATAGTGCATGTCCACACCGACCTCCTTCACTGTCGGGGGGTACATCTCTC 1961420
Query 9851 C 9851
|
Sbjct 1961419 C 1961419
>seq8213
Length=7130527
Score = 95.1 bits (104), Expect = 2e-14
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791
|||||| || || || |||| || || | || || || ||||| |||||||||||
Sbjct 3304015 GTTGCAGAATTCACTATGTCAAATCCAACTTTGCCTCCAAATGTGCTTGGTTTCCAGTAC 3304074
Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851
|| || || ||| |||| ||| || ||||| |||||||| |||||||||| |||
Sbjct 3304075 GTGGGAGAACATATGGGGTTCCCCAATAGTCCTTTCAGGGAAAAGGGAGCCCCCATCTCC 3304134
Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911
| |||||||| || || || || ||||| | || |||| || | |||| ||
Sbjct 3304135 ACCATGCTCTCTCCAAATATTGCTCCTGGACGTGTTTTCTCCAACAGTAGACCGGGATAA 3304194
Query 8912 AACTCCACAGCCTCGATGTCTCCGT 8936
|| |||| ||| | ||||| ||||
Sbjct 3304195 AATTCCAGAGCATTTATGTCACCGT 3304219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708377603972800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |