Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq9898 628 3e-175 seq11714 118 1e-21 seq11381 111 2e-19 seq9943 111 2e-19 >seq9898 Length=4754808 Score = 628 bits (696), Expect = 3e-175 Identities = 1325/1972 (67%), Gaps = 17/1972 (1%) Strand=Plus/Minus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 ||| ||||||||| | || || | | ||||||| || || |||||||| | | | Sbjct 101400 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATTTCCTCATTCCACAGTCCCCG 101341 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 || || | | | || ||||| || || || | ||||| ||||| || | ||||| Sbjct 101340 TTCAGTCAGGTCCTTGAGCAGATGTGGGTTTACAATCTGAAACTCTCCGGAGAGGACTCT 101281 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || ||||| || | ||| | |||||||| || || | ||||| || Sbjct 101280 GCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCTAGTATTTGTGC 101221 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 || || ||||| ||||| || |||| ||| | || || || | ||| | | | | || Sbjct 101220 TGTGGAAGCAGTAGGCATGGGGGCCAACAACAGGCTGTTCCTCACACCATGTTTAGTAAT 101161 Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542 || || || || | | ||| | ||| || | | ||| || Sbjct 101160 CTTCTCCTTAAGCAGCTTCCAGTCCCAGAGCGCAGTCGGCACCTTCTCCCACATGTCGTA 101101 Query 62543 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62602 ||| ||||| || ||||| | || ||| ||||| || || || || || || || Sbjct 101100 TTGCAGAATGCCCTTACTCACTGGAGAACCTGGGTATGTCTCATAAGGCCCGTCTTTTTC 101041 Query 62603 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62662 |||| || || || ||||| | || |||| || || || || ||||||| | || Sbjct 101040 TGCTAACTCGCAGCTTGCCTCCAGGGCGGCGTAGTATATTGTCTCAAAGATCTGGATGTT 100981 Query 62663 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62722 || || ||||| | || |||||||||||| | |||||| || || || || | Sbjct 100980 CAGCAGCTGGGCTTCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAG 100921 Query 62723 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62782 || || || ||||| ||||| || || || | ||| || ||| | || ||||| || | Sbjct 100920 ACCCTGCACTCCAATTCCGATTGGCCTGTGGCGCTTGTTCGAGTTCTCGGCTTCAGGGAC 100861 Query 62783 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62842 || || || ||||| || || || || ||||| ||||| ||||||||||| ||| Sbjct 100860 TGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACAGA 100801 Query 62843 CTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGCAACAGA 62899 || || || ||||| || ||| | ||| ||||||| | |||| ||| Sbjct 100800 GGCAAGCTTTTTGAAGTCAAAGGTCCGTTCTGGAGTAACATACATGTTAAGAGCAATAGA 100741 Query 62900 TGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 |||| ||||| ||||||||||||| | || | | ||| | | ||||||||||| Sbjct 100740 AGCCAAGTTACAGACGGCTACCTCATCTTTGCTT--GTATACTCCACAATCTCAGTGCAC 100683 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 | ||||| || |||||||| || ||||| || ||||||||||| ||||||| ||||| Sbjct 100682 AAGTTACTGCATTTGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCATCT 100623 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077 || || | ||| | ||||| || |||||| ||||||| ||||| || || | ||| || Sbjct 100622 TTGTACAACATGTAAGGAGTTCCTGTTTCAGTCTGAGACTCTATGATGGCATACCACACC 100563 Query 63078 ACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGT 63137 ||||||| | | ||| ||| | ||| ||||| | || |||| Sbjct 100562 TGCTGAGCCTTGACCACCCGTTTCACTCTGCCTTCCTGCTCGTAGCGAGTGTACAGCTTC 100503 Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || ||||| || |||||| | |||| ||||| || ||| || |||||||| ||| Sbjct 100502 TCAAACTCCTCCCCCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGAC 100443 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63256 || || || | | ||| | ||||| || | |||||| ||||| || || ||| || Sbjct 100442 CAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGC-ATAGAA 100384 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 || |||| | || || ||||| || || || ||||| || | || ||||| | | Sbjct 100383 GAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTTAACTCAAGGAAGTCAAA 100324 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 | ||| | ||||| || || | ||| ||||| | | ||||| ||||| || || || Sbjct 100323 CACGTCAAAGTGCCATGGCTCAAGGTACATGGCAAAGGCACCAGGTCGTTTATTGCCACC 100264 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 || || | ||| | || ||||| || || || |||| |||||| | || || ||||| Sbjct 100263 TTGGTCCACGTAGCGCGCCGTGTTGTTGTACACCCTCAGCATTGGCACAAGGCCATTTGA 100204 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63496 ||||||| || || | || |||||||| | | | ||| |||| || || ||| Sbjct 100203 ATTACCATTTGTTCCAGCAATGTAGCTTCCTGTTGATCTAATGCAGCTAACTGCTACACC 100144 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTC 63556 || || ||||| ||| ||||| | |||||| |||| | || ||||| || || || Sbjct 100143 AATCCCTCCTGCAGATTTGGAGATGAGAGCGCATTGTTTGAGTGTATCATAAATGCCATC 100084 Query 63557 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63616 ||||| ||||| ||||| || || || || ||||| | || | | | || || Sbjct 100083 AATGCTGTCATCCTTCATGGCCAGCAGGAAGCAACTAGAGAGCTGTGGTCTGTTGGTGCC 100024 Query 63617 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63676 ||||| || | || ||||| || || || ||||| || ||||| || || ||||| || Sbjct 100023 TGCATTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGT 99964 Query 63677 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63736 |||||| |||| || ||||| || || ||||| || || || | ||| | |||||| Sbjct 99963 CTCAATGGCTGCATCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAGCATGTG 99904 Query 63737 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63796 ||| || | ||| | | |||| || ||||||| || |||||| || | || || Sbjct 99903 CTGTGGACGCTCAGCCACCTTGCCATTGATTTTCAGCAGGTAGGAGCGCTCTAGGGTCTT 99844 Query 63797 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 63856 ||| ||||| | || || ||||| || | || || || ||| | |||||||| || Sbjct 99843 AAAGCCAAAGAAATTATAAGAAAAATCCCTATCATAGATTATAGCAGAGTTGAGGCGGTC 99784 Query 63857 CTTATATTTGTTA--ACTATATCCATGGTGATACTT--GAAATAATCGGAGAATGTTTCC 63912 | | |||| | || ||||| | ||| ||| || || || || || || | Sbjct 99783 --TTTGTTTGCAAGGACAATATCTAGGGT--CTCTTGGGAGATCATGGGGGAGTGGCGCT 99728 Query 63913 CATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttG 63972 ||| ||| || ||||||||||| | ||||||||| || ||||| || | || || | Sbjct 99727 TGTTTAAAGGGTTGACATAGTTGAACAGATCCTCCATGACGTCACTGAACACCTTCTTGG 99668 Query 63973 TTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTT 64032 | || || || || || || || || || | || || |||| ||||||||| || || | Sbjct 99667 TCTCTTTATGGAGGTTGGAAACAGCAATGCGTGCAGCCAGAAGGGCATAATCGGGGTGCT 99608 Query 64033 GTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTC 64092 || || ||||| || || || || || || |||||||| || || || || |||| Sbjct 99607 TAGTGGTTAGTGTGGCAGCAATCTCCGCAGCGAGTGTGTCCAACTCCACAGTGGTCACTC 99548 Query 64093 CATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGT 64152 || | || | ||||| || |||||||| | |||| || || | | |||| || Sbjct 99547 CACTGTACAGACCTTGGATCACCTTCATTGTGATTTGTGCGGGGTCCACAAACTCCGCGT 99488 Query 64153 TTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64204 | | || ||||| | ||| || ||||| |||||||||||||||||||| Sbjct 99487 TGAGCCCGTAACAGAGCTTTTGGATTCGAGAGGTGATTTTATCAAACATGAC 99436 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| || ||||| ||||| || || | |||| ||| | || ||||| ||||| |||| Sbjct 101662 TCCAGCCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 101603 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||| || || || || ||| |||| || | |||||||||||| || | || |||| Sbjct 101602 TTAGAGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTGAGTATAGTCT 101543 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62230 | |||| |||||||||| |||||||| | | || | ||| ||||| Sbjct 101542 TCTGTGATATTTCCCAAACTGTTTTATACAGCTGTTTTAAATCATCTGG 101494 >seq11714 Length=3826745 Score = 118 bits (130), Expect = 1e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||||| || || ||||| || | |||||||||||||||| ||||| || ||| | | Sbjct 1501522 CATATGATTCATAAGGTCCATCATGGGCAGCTAGTTCACAACTGGCCTCCAAAGCAGCAT 1501581 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 |||| ||||| || || |||| | || |||| || ||||| || |||||||||| Sbjct 1501582 AATATATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCTTCTTCACTTTCAAATGGAT 1501641 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 || | |||||| || ||||| || | || |||||||| || || |||||||| || | Sbjct 1501642 AACGCATGAGAATGAAGGCGTCTGCAAGACCCTGAACACCGATTCCAATAGGTCTGTGGC 1501701 Query 62755 TCTTATTAGA 62764 | | ||||| Sbjct 1501702 GCATGTTAGA 1501711 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| || | ||||| || ||||| ||||||||||| || || || || ||| Sbjct 1503114 GTGCCAGCATTGAACAGTGTAGGGGAGGCGTGAGTAAACCATTTCTCTGAGAGCAGGTTG 1503173 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || |||||||| |||| ||| | ||| || |||||| || || || || | ||| | | Sbjct 1503174 TAGGTCTCAATGGCTGCGTCCACATCTTGTTTATGAATCCCAACAGCCACTCTCATGAGC 1503233 Query 63732 ATGTGCTGAGGTCTTTCA 63749 || |||||||| || ||| Sbjct 1503234 ATATGCTGAGGCCTCTCA 1503251 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 |||| || ||||||||||| || ||||| | ||||| || |||||||| || || ||| Sbjct 1502037 TATTCTACAATCTCAGTGCACAGGTTACTGGATTTGATGGTGCCTAAATTCTGCTGGTTA 1502096 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||||| | ||||| ||||| || || || ||| | || || || || || |||| || Sbjct 1502097 CTCTTCCTATTACATGCATCTTTGTAGAGCATGTACGGTGTCCCTGTCTCTGTCTGTGAC 1502156 Query 63057 TCTATAATCGCTTTCCA 63073 || ||||| || | ||| Sbjct 1502157 TCAATAATGGCATACCA 1502173 >seq11381 Length=12543884 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || ||||| |||||| | || || ||||||||||| || | ||||| Sbjct 9286990 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGACCGGGCATTAGACCCCTCTTTT 9286931 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||| | |||| || || |||||||| ||||| ||||| ||||| || ||||| | Sbjct 9286930 TCAGCCAATAAATGGCCGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATG 9286871 Query 33446 CAATAAGTCTCTCTCC 33461 | | || ||| || || Sbjct 9286870 CCACAATTCTTTCACC 9286855 >seq9943 Length=499256 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || ||||||||||| || || ||||||||||| ||||| || || | Sbjct 292078 CCTCGTCTCTGCTGATGAGTTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 292019 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||| ||||| |||||||| |||||||| || || || || || || | Sbjct 292018 TGAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATCCCCTCGACAGCGGCGAACG 291959 Query 33446 C 33446 | Sbjct 291958 C 291958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622817782719200