Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq9898 628 3e-175
seq11714 118 1e-21
seq11381 111 2e-19
seq9943 111 2e-19
>seq9898
Length=4754808
Score = 628 bits (696), Expect = 3e-175
Identities = 1325/1972 (67%), Gaps = 17/1972 (1%)
Strand=Plus/Minus
Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302
||| ||||||||| | || || | | ||||||| || || |||||||| | | |
Sbjct 101400 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATTTCCTCATTCCACAGTCCCCG 101341
Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362
|| || | | | || ||||| || || || | ||||| ||||| || | |||||
Sbjct 101340 TTCAGTCAGGTCCTTGAGCAGATGTGGGTTTACAATCTGAAACTCTCCGGAGAGGACTCT 101281
Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422
|| ||||| || || ||||| || | ||| | |||||||| || || | ||||| ||
Sbjct 101280 GCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCTAGTATTTGTGC 101221
Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482
|| || ||||| ||||| || |||| ||| | || || || | ||| | | | | ||
Sbjct 101220 TGTGGAAGCAGTAGGCATGGGGGCCAACAACAGGCTGTTCCTCACACCATGTTTAGTAAT 101161
Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542
|| || || || | | ||| | ||| || | | ||| ||
Sbjct 101160 CTTCTCCTTAAGCAGCTTCCAGTCCCAGAGCGCAGTCGGCACCTTCTCCCACATGTCGTA 101101
Query 62543 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62602
||| ||||| || ||||| | || ||| ||||| || || || || || || ||
Sbjct 101100 TTGCAGAATGCCCTTACTCACTGGAGAACCTGGGTATGTCTCATAAGGCCCGTCTTTTTC 101041
Query 62603 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62662
|||| || || || ||||| | || |||| || || || || ||||||| | ||
Sbjct 101040 TGCTAACTCGCAGCTTGCCTCCAGGGCGGCGTAGTATATTGTCTCAAAGATCTGGATGTT 100981
Query 62663 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62722
|| || ||||| | || |||||||||||| | |||||| || || || || |
Sbjct 100980 CAGCAGCTGGGCTTCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAG 100921
Query 62723 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62782
|| || || ||||| ||||| || || || | ||| || ||| | || ||||| || |
Sbjct 100920 ACCCTGCACTCCAATTCCGATTGGCCTGTGGCGCTTGTTCGAGTTCTCGGCTTCAGGGAC 100861
Query 62783 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62842
|| || || ||||| || || || || ||||| ||||| ||||||||||| |||
Sbjct 100860 TGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACAGA 100801
Query 62843 CTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGCAACAGA 62899
|| || || ||||| || ||| | ||| ||||||| | |||| |||
Sbjct 100800 GGCAAGCTTTTTGAAGTCAAAGGTCCGTTCTGGAGTAACATACATGTTAAGAGCAATAGA 100741
Query 62900 TGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAA 62957
|||| ||||| ||||||||||||| | || | | ||| | | |||||||||||
Sbjct 100740 AGCCAAGTTACAGACGGCTACCTCATCTTTGCTT--GTATACTCCACAATCTCAGTGCAC 100683
Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017
| ||||| || |||||||| || ||||| || ||||||||||| ||||||| |||||
Sbjct 100682 AAGTTACTGCATTTGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCATCT 100623
Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077
|| || | ||| | ||||| || |||||| ||||||| ||||| || || | ||| ||
Sbjct 100622 TTGTACAACATGTAAGGAGTTCCTGTTTCAGTCTGAGACTCTATGATGGCATACCACACC 100563
Query 63078 ACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGT 63137
||||||| | | ||| ||| | ||| ||||| | || ||||
Sbjct 100562 TGCTGAGCCTTGACCACCCGTTTCACTCTGCCTTCCTGCTCGTAGCGAGTGTACAGCTTC 100503
Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197
|| ||||| || |||||| | |||| ||||| || ||| || |||||||| |||
Sbjct 100502 TCAAACTCCTCCCCCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGAC 100443
Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63256
|| || || | | ||| | ||||| || | |||||| ||||| || || ||| ||
Sbjct 100442 CAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGC-ATAGAA 100384
Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316
|| |||| | || || ||||| || || || ||||| || | || ||||| | |
Sbjct 100383 GAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTTAACTCAAGGAAGTCAAA 100324
Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376
| ||| | ||||| || || | ||| ||||| | | ||||| ||||| || || ||
Sbjct 100323 CACGTCAAAGTGCCATGGCTCAAGGTACATGGCAAAGGCACCAGGTCGTTTATTGCCACC 100264
Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436
|| || | ||| | || ||||| || || || |||| |||||| | || || |||||
Sbjct 100263 TTGGTCCACGTAGCGCGCCGTGTTGTTGTACACCCTCAGCATTGGCACAAGGCCATTTGA 100204
Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63496
||||||| || || | || |||||||| | | | ||| |||| || || |||
Sbjct 100203 ATTACCATTTGTTCCAGCAATGTAGCTTCCTGTTGATCTAATGCAGCTAACTGCTACACC 100144
Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTC 63556
|| || ||||| ||| ||||| | |||||| |||| | || ||||| || || ||
Sbjct 100143 AATCCCTCCTGCAGATTTGGAGATGAGAGCGCATTGTTTGAGTGTATCATAAATGCCATC 100084
Query 63557 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63616
||||| ||||| ||||| || || || || ||||| | || | | | || ||
Sbjct 100083 AATGCTGTCATCCTTCATGGCCAGCAGGAAGCAACTAGAGAGCTGTGGTCTGTTGGTGCC 100024
Query 63617 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63676
||||| || | || ||||| || || || ||||| || ||||| || || ||||| ||
Sbjct 100023 TGCATTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGT 99964
Query 63677 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63736
|||||| |||| || ||||| || || ||||| || || || | ||| | ||||||
Sbjct 99963 CTCAATGGCTGCATCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAGCATGTG 99904
Query 63737 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63796
||| || | ||| | | |||| || ||||||| || |||||| || | || ||
Sbjct 99903 CTGTGGACGCTCAGCCACCTTGCCATTGATTTTCAGCAGGTAGGAGCGCTCTAGGGTCTT 99844
Query 63797 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 63856
||| ||||| | || || ||||| || | || || || ||| | |||||||| ||
Sbjct 99843 AAAGCCAAAGAAATTATAAGAAAAATCCCTATCATAGATTATAGCAGAGTTGAGGCGGTC 99784
Query 63857 CTTATATTTGTTA--ACTATATCCATGGTGATACTT--GAAATAATCGGAGAATGTTTCC 63912
| | |||| | || ||||| | ||| ||| || || || || || || |
Sbjct 99783 --TTTGTTTGCAAGGACAATATCTAGGGT--CTCTTGGGAGATCATGGGGGAGTGGCGCT 99728
Query 63913 CATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttG 63972
||| ||| || ||||||||||| | ||||||||| || ||||| || | || || |
Sbjct 99727 TGTTTAAAGGGTTGACATAGTTGAACAGATCCTCCATGACGTCACTGAACACCTTCTTGG 99668
Query 63973 TTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTT 64032
| || || || || || || || || || | || || |||| ||||||||| || || |
Sbjct 99667 TCTCTTTATGGAGGTTGGAAACAGCAATGCGTGCAGCCAGAAGGGCATAATCGGGGTGCT 99608
Query 64033 GTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTC 64092
|| || ||||| || || || || || || |||||||| || || || || ||||
Sbjct 99607 TAGTGGTTAGTGTGGCAGCAATCTCCGCAGCGAGTGTGTCCAACTCCACAGTGGTCACTC 99548
Query 64093 CATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGT 64152
|| | || | ||||| || |||||||| | |||| || || | | |||| ||
Sbjct 99547 CACTGTACAGACCTTGGATCACCTTCATTGTGATTTGTGCGGGGTCCACAAACTCCGCGT 99488
Query 64153 TTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64204
| | || ||||| | ||| || ||||| ||||||||||||||||||||
Sbjct 99487 TGAGCCCGTAACAGAGCTTTTGGATTCGAGAGGTGATTTTATCAAACATGAC 99436
Score = 107 bits (118), Expect = 2e-18
Identities = 125/169 (74%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121
|||| || ||||| ||||| || || | |||| ||| | || ||||| ||||| ||||
Sbjct 101662 TCCAGCCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 101603
Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181
| | ||| || || || || ||| |||| || | |||||||||||| || | || ||||
Sbjct 101602 TTAGAGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTGAGTATAGTCT 101543
Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62230
| |||| |||||||||| |||||||| | | || | ||| |||||
Sbjct 101542 TCTGTGATATTTCCCAAACTGTTTTATACAGCTGTTTTAAATCATCTGG 101494
>seq11714
Length=3826745
Score = 118 bits (130), Expect = 1e-21
Identities = 140/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634
|||||| || || ||||| || | |||||||||||||||| ||||| || ||| | |
Sbjct 1501522 CATATGATTCATAAGGTCCATCATGGGCAGCTAGTTCACAACTGGCCTCCAAAGCAGCAT 1501581
Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694
|||| ||||| || || |||| | || |||| || ||||| || ||||||||||
Sbjct 1501582 AATATATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCTTCTTCACTTTCAAATGGAT 1501641
Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754
|| | |||||| || ||||| || | || |||||||| || || |||||||| || |
Sbjct 1501642 AACGCATGAGAATGAAGGCGTCTGCAAGACCCTGAACACCGATTCCAATAGGTCTGTGGC 1501701
Query 62755 TCTTATTAGA 62764
| | |||||
Sbjct 1501702 GCATGTTAGA 1501711
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671
|| || ||||| || | ||||| || ||||| ||||||||||| || || || || |||
Sbjct 1503114 GTGCCAGCATTGAACAGTGTAGGGGAGGCGTGAGTAAACCATTTCTCTGAGAGCAGGTTG 1503173
Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731
|| |||||||| |||| ||| | ||| || |||||| || || || || | ||| | |
Sbjct 1503174 TAGGTCTCAATGGCTGCGTCCACATCTTGTTTATGAATCCCAACAGCCACTCTCATGAGC 1503233
Query 63732 ATGTGCTGAGGTCTTTCA 63749
|| |||||||| || |||
Sbjct 1503234 ATATGCTGAGGCCTCTCA 1503251
Score = 89.7 bits (98), Expect = 6e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996
|||| || ||||||||||| || ||||| | ||||| || |||||||| || || |||
Sbjct 1502037 TATTCTACAATCTCAGTGCACAGGTTACTGGATTTGATGGTGCCTAAATTCTGCTGGTTA 1502096
Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056
||||| | ||||| ||||| || || || ||| | || || || || || |||| ||
Sbjct 1502097 CTCTTCCTATTACATGCATCTTTGTAGAGCATGTACGGTGTCCCTGTCTCTGTCTGTGAC 1502156
Query 63057 TCTATAATCGCTTTCCA 63073
|| ||||| || | |||
Sbjct 1502157 TCAATAATGGCATACCA 1502173
>seq11381
Length=12543884
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| || || ||||| |||||| | || || ||||||||||| || | |||||
Sbjct 9286990 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGACCGGGCATTAGACCCCTCTTTT 9286931
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| |||||| | |||| || || |||||||| ||||| ||||| ||||| || ||||| |
Sbjct 9286930 TCAGCCAATAAATGGCCGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATG 9286871
Query 33446 CAATAAGTCTCTCTCC 33461
| | || ||| || ||
Sbjct 9286870 CCACAATTCTTTCACC 9286855
>seq9943
Length=499256
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||||||||| || || ||||||||||| || || ||||||||||| ||||| || || |
Sbjct 292078 CCTCGTCTCTGCTGATGAGTTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 292019
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| || |||| ||||| |||||||| |||||||| || || || || || || |
Sbjct 292018 TGAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATCCCCTCGACAGCGGCGAACG 291959
Query 33446 C 33446
|
Sbjct 291958 C 291958
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622817782719200
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