Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq10290 98.7 8e-16 >seq10290 Length=4455921 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | ||| || ||||| || || || ||||||||||| | | Sbjct 2171163 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGAC 2171104 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| || | || ||||| ||| |||| |||| ||| || || || Sbjct 2171103 AGAGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGA 2171044 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| ||| | |||||| | | | ||||||| ||||||| Sbjct 2171043 ATGCCTTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 2170984 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || || || ||||| ||||| |||||||| Sbjct 2170983 TCCAAAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2170937 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | ||| || ||||| || || || ||||||||||| | Sbjct 2170935 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 2170876 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || ||||| ||| | || | || ||| || || || Sbjct 2170875 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGA 2170816 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| ||| | ||| || | | | ||||||| ||||||| Sbjct 2170815 ATGCCTTCCTTGTCCTGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCACC 2170756 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | |||||||||||| || || || ||||| ||||| |||||||| ||| Sbjct 2170755 TCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATTG 2170705 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || |||||||||||||| || |||||||||| | ||| | || Sbjct 2171377 CAGGACAAGATGGAGGGTGGACTCCTTTTGGATATTGTAGTCGGAGAGGGTGCGCCCATC 2171318 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 || | || ||||| ||| | || | || ||| || || || | ||| || ||||| Sbjct 2171317 TTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 2171258 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | ||||||| |||| |||||| Sbjct 2171257 CTGGATCTTGGC--CTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 2171200 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || ||||| ||||| |||||||| Sbjct 2171199 GTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2171165 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | || || ||||| || || || ||||||||||||| Sbjct 2173082 CCACCTCTGAGGCGCAGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAG 2173023 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||| | || ||||| ||| ||||||||| ||||| || || Sbjct 2173022 AGGGTACGCCCATCCTCAAGCTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGGGGA 2172963 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || ||| ||||| | | | ||||| | |||||| Sbjct 2172962 ATGCCTTCCTTGTCCTGAATCTTAGCT--TTCACGTTTTCAATGGTGTCACTGGGCTCAA 2172905 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| || ||||| ||||| || || |||||||| || ||||| Sbjct 2172904 CCTCAAGGGTAATAGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 2172856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405005946893800