Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3442 122 6e-23 seq10883 113 3e-20 seq5759 113 3e-20 seq4807 113 3e-20 seq934 113 3e-20 seq10290 111 1e-19 seq12961 95.1 8e-15 seq5437 95.1 8e-15 seq11493 89.7 3e-13 seq8102 87.8 1e-12 seq11924 86.0 4e-12 seq10730 86.0 4e-12 seq9846 86.0 4e-12 seq9138 86.0 4e-12 seq9105 86.0 4e-12 seq7656 86.0 4e-12 seq4773 86.0 4e-12 seq579 86.0 4e-12 seq13146 84.2 1e-11 seq10608 84.2 1e-11 seq1000 84.2 1e-11 seq16509 82.4 5e-11 seq13390 82.4 5e-11 seq4440 82.4 5e-11 seq1111 82.4 5e-11 >seq3442 Length=1619139 Score = 122 bits (134), Expect = 6e-23 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| ||||||||||| ||||| ||| |||||||| Sbjct 1245781 ACCCGACCAAGTTTTTTGGTTGTGAACTGGGCGCTCAGACCCAGTTCGATTCCAAAAACG 1245722 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | |||| |||||| ||||| || || | | ||||||||||||| | || ||||| | Sbjct 1245721 ACCGCTACATCGTCAACGGCTCCCACGAGGCCAACAAGCTGCAGGACATGCTCGACGGGT 1245662 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || || || ||||||||||| || || || ||||| || || || || Sbjct 1245661 TCATACGGAAATTTGTGCTGTGCTCCGAGTGTGACAACCCCGAAACTGATCT 1245610 >seq10883 Length=362615 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||| || ||| |||||| || |||||||| Sbjct 215492 AAGCCCGTTCCCTTGGCTGTGGTTTCGCAAGGGGGTATATAGGGACAGTGGGAATCTCGT 215433 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 215432 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 215398 >seq5759 Length=17482 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||| || ||| |||||| || |||||||| Sbjct 1251 AAGCCCGTTCCCTTGGCTGTGGTTTCGCAAGGGGGTATATAGGGACAGTGGGAATCTCGT 1192 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1191 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1157 >seq4807 Length=20766 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||| || ||| |||||| || |||||||| Sbjct 2986 AAGCCCGTTCCCTTGGCTGTGGTTTCGCAAGGGGGTATATAGGGACAGTGGGAATCTCGT 2927 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2926 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2892 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 9385 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGACTATCGGTCTCGT 9444 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 9445 GCCGGTATTTAGCCTTA 9461 >seq934 Length=61422 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||| || ||| |||||| || |||||||| Sbjct 5225 AAGCCCGTTCCCTTGGCTGTGGTTTCGCAAGGGGGTATATAGGGACAGTGGGAATCTCGT 5166 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 5165 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 5131 >seq10290 Length=4455921 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||||| || | ||| || ||| || || ||||| ||||| |||| Sbjct 2171165 TACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAG 2171106 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | || |||| || | || || |||||||| || || | || ||||| | || Sbjct 2171105 ACAGAGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGG 2171046 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| |||||| ||| || ||||||||||| | || || | || | Sbjct 2171045 GAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCA 2170986 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || || || | ||||||||| || |||||||| Sbjct 2170985 CCTCCAAAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2170937 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | |||| || || ||||||||| || || || || ||||| || | Sbjct 2173084 TACCACCTCTGAGGCGCAGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGG 2173025 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | || || || ||||| || || | ||||||||| | || Sbjct 2173024 AGAGGGTACGCCCATCCTCAAGCTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGGG 2172965 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| |||||| ||| || ||||| || | | || || | |||| Sbjct 2172964 GAATGCCTTCCTTGTCCTGAATCTTAGCTTTCACGTTTTCAATGGTGTCACTGGGCTCAA 2172905 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || | ||||||||||| || || | ||| || || || || |||||| Sbjct 2172904 CCTCAAGGGTAATAGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCATG 2172855 >seq12961 Length=193462 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| |||||||||||||||||||||||| || ||| |||||| || |||||||| Sbjct 192346 AAGGCCGTTCCCTTGGCTGTGGTTTCGCAAGGGGGTATATAGGGACAGTGGGAATCTCGT 192405 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||| |||| ||||||||||||||||| Sbjct 192406 TCATCCATTCACACGCGACACTAATTAGATGACGA 192440 >seq5437 Length=1481229 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| Sbjct 297257 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACAGTACTTGTTGACTATCAGTCTCAT 297198 Query 20007 GGTAATATTTAGCCTTA 20023 | | ||||||| |||| Sbjct 297197 GTCAGTATTTAGTCTTA 297181 >seq11493 Length=3875266 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 1561877 CTCTCTCTTCAACGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGACTATCGGTCTCAT 1561936 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 1561937 ACCAGTATTTAGCCTTA 1561953 >seq8102 Length=7238142 Score = 87.8 bits (96), Expect = 1e-12 Identities = 68/80 (85%), Gaps = 6/80 (8%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG- 20005 |||||||||| |||||||||||||||||||||||||||||||||| ||||| || | | Sbjct 5327118 CTCTCTCTTCCAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTGACTATCAGTTTTGT 5327177 Query 20006 --CGGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 5327178 TTCGG---TATTTAGCCTTA 5327194 >seq11924 Length=265747 Score = 86.0 bits (94), Expect = 4e-12 Identities = 66/76 (87%), Gaps = 2/76 (3%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCG-CTATCGGTCTCG 20005 |||||||||||||||||||||||||||||||| || |||||| |||| || ||| ||||| Sbjct 260644 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACCGTACTT-TTCGACTGTCGCTCTCG 260702 Query 20006 CGGTAATATTTAGCCT 20021 | | |||||||||| Sbjct 260703 TGCAAGTATTTAGCCT 260718 >seq10730 Length=375406 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||| ||||||||| || | | | ||||| ||||||||||||| Sbjct 343233 CTCTCTCTTCAAAGTTCTTATCAACTTTCTCTTATGATTCTTGTCGACTATCGGTCTCGC 343174 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 343173 GCTGGTATTTAGCCTTA 343157 >seq9846 Length=516713 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||| | ||||||||||||||||||| ||||| ||||| |||||||||| | Sbjct 334202 CTCTCTCTTCGAGGTTCTTTTCAACTTTCCCTTACGGTTCTTGTCGACTATCGGTCTTGT 334143 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 334142 GCTGGTATTTAGCCTTA 334126 >seq9138 Length=5285520 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| ||||||||| ||||||||||||||||| ||||||||||| |||||||||||| Sbjct 3720487 CTCTGTCTTCAAAGCTCTTTTCAACTTTCCCTTACGGTACTTGTCGACTATCGGTCTCGT 3720428 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||| ||||| Sbjct 3720427 GCCGGTATTTAACCTTA 3720411 >seq9105 Length=686709 Score = 86.0 bits (94), Expect = 4e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19946 TCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| Sbjct 531007 TCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGCTCTTGTCGACTATCGGTCTCG 531066 Query 20006 CGGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 531067 -TGCCGTATTTAGCCTT 531082 >seq7656 Length=1346092 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||||||||| |||| || |||| Sbjct 41458 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGACTATTGGACTCGT 41399 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||| Sbjct 41398 GCCGGTTTTTAGCCTTA 41382 >seq4773 Length=1511541 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| || |||||||| ||||| ||||| Sbjct 537337 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACAGTACTTGTCGACTATCAGTCTCAT 537278 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||| ||||| Sbjct 537277 GCCAGTATTTATCCTTA 537261 >seq579 Length=68278 Score = 86.0 bits (94), Expect = 4e-12 Identities = 67/78 (86%), Gaps = 4/78 (5%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCG-CTATCGGTCTCG 20005 || ||||||||||||||||||||||||||||| ||| ||| |||| |||||||||||| Sbjct 68156 CTTTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGATAC---TTCGACTATCGGTCTCG 68100 Query 20006 CGGTAATATTTAGCCTTA 20023 | | ||||||| ||||| Sbjct 68099 TGCTGATATTTAACCTTA 68082 >seq13146 Length=180689 Score = 84.2 bits (92), Expect = 1e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAA-GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 ||||||||||||| ||||||||||||||||||| || | |||||| |||||||||||| Sbjct 123551 CTCTCTCTTCAAAAGTTCTTTTCAACTTTCCCTTACAGCACTTGTCAACTATCGGTCTCG 123492 Query 20006 CGGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 123491 TGCCGGTATTTAGCCTTA 123474 >seq10608 Length=394754 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| Sbjct 248583 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGCTCTTGTCGACTATCGGTCTCG- 248525 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 248524 TGCCGTATTTAGCCTT 248509 >seq1000 Length=2939233 Score = 84.2 bits (92), Expect = 1e-11 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCG-CTATCGGTCTCG 20005 ||||||||||||||||||||||||||||| | ||||||||| |||| || ||||||| | Sbjct 1890452 CTCTCTCTTCAAAGTTCTTTTCAACTTTCTTTTACGGTACTT-TTCGACTGTCGGTCTTG 1890394 Query 20006 CGGTAATATTTAGCCTTA 20023 || |||||||||||| Sbjct 1890393 TGGCGGTATTTAGCCTTA 1890376 >seq16509 Length=2056469 Score = 82.4 bits (90), Expect = 5e-11 Identities = 79/97 (81%), Gaps = 7/97 (7%) Strand=Plus/Plus Query 25901 TAAGCCCGTTCCCTT-GGCTGTGGTTTCGCTAG----ATAGTAG-ATAGGGGGTAATCTC 25954 |||||||| |||||| |||||||||||| | | ||| || | || ||| ||| || Sbjct 1486288 TAAGCCCGCTCCCTTCGGCTGTGGTTTCTCGGGGGGCATATAAGGACAGCGGGAAAT-TC 1486346 Query 25955 GTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| |||| |||||||||||||||||||||||||||| Sbjct 1486347 GTTCATCCATTCATGCGCGTCACTAATTAGATGACGA 1486383 >seq13390 Length=2852176 Score = 82.4 bits (90), Expect = 5e-11 Identities = 67/80 (84%), Gaps = 6/80 (8%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG- 20005 |||||||||||||||||||||||||||||||| |||||||||| |||| |||||| Sbjct 696640 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTTCGGTACTTGTAGAGTATCAGTCTCGT 696699 Query 20006 --CGGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 696700 ACCGG---TATTTAGCCTTA 696716 >seq4440 Length=1539330 Score = 82.4 bits (90), Expect = 5e-11 Identities = 65/77 (84%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| ||||||||||| |||||||||||| || ||||||||||| ||||||||||| Sbjct 537083 CTCTTTCTTCAAAGTTATTTTCAACTTTCTCTTACGGTACTTGTCGACTATCGGTCTCAT 537142 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||||||| Sbjct 537143 CGT--TATTTAGCCTTA 537157 >seq1111 Length=8431696 Score = 82.4 bits (90), Expect = 5e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 ||||||||||||||||||||||||||| || ||||| ||||| |||| |||||| | Sbjct 8209442 CTCTCTTCAAAGTTCTTTTCAACTTTCTCTTACGGTGCTTGTCAACTATTGGTCTCATGC 8209501 Query 20009 TAATATTTAGCCTTA 20023 ||||||||||||| Sbjct 8209502 CGATATTTAGCCTTA 8209516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334879354351220