Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq10290 111 1e-19
>seq10290
Length=4455921
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | || || || ||||||| | || |||||| |
Sbjct 2170937 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTTTGGAGGTGGAGCCCAGC 2170996
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || ||| ||||| | || | ||| ||||| ||||| ||||| || || ||
Sbjct 2170997 GACACCATTGAGAATGTGAAGGCCAAGATTCAG-GACAAGGAAGGCATTCCCCCAGATCA 2171055
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | |||||||||||||| || | ||||| | |||||| || || |||||
Sbjct 2171056 GCAGAGGCTGATTTTTGCCGGCAAGCAGCTCGAAGACGGCCGCACTCTGTCTGACTACAA 2171115
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||| ||||||||||| || ||| | || || | || ||||| ||
Sbjct 2171116 CATTCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2171163
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | || || || ||||||| | || |||||| | |
Sbjct 2171165 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 2171224
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| ||||| || ||| ||||| ||||| ||||| || || ||
Sbjct 2171225 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 2171284
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||||||||| || | ||||||| ||||| | ||| ||||||
Sbjct 2171285 CAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGATGGGCGCACCCTCTCCGACTACAAT 2171344
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| || ||||| || ||| | || ||
Sbjct 2171345 ATCCAAAAGGAGTCCACCCTCCATCTTGTCCT 2171376
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| | ||||| ||| | || || | || || ||| | |
Sbjct 2172856 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACTATTACCCTTGAGGTTGAGCCCAGT 2172915
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || |||| || || | ||| ||||| ||||| ||||| || || ||
Sbjct 2172916 GACACCATTGAAAACGTGAAAGCTAAGATTCAG-GACAAGGAAGGCATTCCCCCAGATCA 2172974
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || |||||||||| ||||| || | || |||| || || | ||| |||||
Sbjct 2172975 ACAAAGGCTTATTTTTGCTGGCAAGCAGCTTGAGGATGGGCGTACCCTCTCCGACTACAA 2173034
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || ||||||||||| || || ||||| || | || ||||| ||
Sbjct 2173035 CATCCAGAAAGAATCCACTCTTCACTTAGTCCTGCGCCTCAGAGGTGG 2173082
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | || || || ||||||| | || |||||| | |
Sbjct 2173084 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 2173143
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| ||||| || ||| ||||| ||||| ||||| || || ||
Sbjct 2173144 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 2173203
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||| || || || | ||||| | || ||| || || |||||
Sbjct 2173204 CAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGTACTCTGTCTGACTACAAC 2173263
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || ||||||||||| || ||| | || ||
Sbjct 2173264 ATCCAGAAAGAATCCACCCTTCATCTTGTTCT 2173295
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | || || ||| ||||||| | || |||||| |
Sbjct 2170709 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTGGAGCCCAGC 2170768
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || | ||| | || | ||| ||||| ||||| ||||| || || ||
Sbjct 2170769 GACACGATTGAAAATGTTAAGGCCAAGATTCAG-GACAAGGAAGGCATTCCCCCAGATCA 2170827
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || ||||||||||| || | || |||| ||||| | || |||||
Sbjct 2170828 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGACTACAA 2170887
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || ||||||||||| || ||| | || || | || ||||| ||
Sbjct 2170888 CATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2170935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433240226705300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |