Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq10290 107 2e-18 >seq10290 Length=4455921 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | ||||||||||| |||||| | || || ||||| Sbjct 2172856 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACTATTACCCTTGAGGTTGAGCCCAGT 2172915 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| || ||| ||||| |||||| ||||| |||||| Sbjct 2172916 GACACCATTGAAAACGTGAAAGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAA 2172975 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||||||||||| ||| ||||| || | || ||| || | |||| || || Sbjct 2172976 CAAAGGCTTATTTTTGCTGGCAAGCAGCTTGAGGATGGGCGTACCCTCTCCGACTACAAC 2173035 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || |||||||| || || || ||||| |||| || | ||||| Sbjct 2173036 ATCCAGAAAGAATCCACTCTTCACTTAGTCCTGCGCCTCAGAGGTGG 2173082 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 || ||||| || ||||| ||||| | || ||||||||||| ||| | || ||| ||| Sbjct 2170706 AATATGCAGATCTTTGTGAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTGGAGCCC 2170765 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||||| | ||| | || || || ||| ||||| |||||| ||||| ||| Sbjct 2170766 AGCGACACGATTGAAAATGTTAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGAT 2170825 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 || || ||| | || | ||| ||||| || | || ||| || | | || || Sbjct 2170826 CAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGACTAC 2170885 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || |||||||| || || ||| | || |||||||| | ||||| Sbjct 2170886 AACATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2170935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422954310604000