Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq10290 176 8e-39 seq11085 129 1e-24 seq16311 84.2 4e-11 >seq10290 Length=4455921 Score = 176 bits (194), Expect = 8e-39 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || ||||| || ||||| ||||| |||||||| || |||||||| || | | Sbjct 2173073 AGGCGCAGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGC 2173014 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| || || || || || |||||||| || || |||||||||||| Sbjct 2173013 CCATCCTCAAGCTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGGGGAATGCCTTCC 2172954 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| |||||||| || || ||| || |||||||| | || || || | ||| Sbjct 2172953 TTGTCCTGAATCTTAGCTTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTA 2172894 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || ||||| || |||||||||||||| || || ||||| ||| Sbjct 2172893 ATAGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCATGATG 2172852 Score = 165 bits (182), Expect = 2e-35 Identities = 162/208 (78%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| |||||||| || || |||||||| || | ||||||||| | Sbjct 2171372 CAAGATGGAGGGTGGACTCCTTTTGGATATTGTAGTCGGAGAGGGTGCGCCCATCTTCAA 2171313 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| ||||| || || | || || || || || ||||||||||||||||| || | Sbjct 2171312 GCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGA 2171253 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||| ||| |||||||||||| | || || |||| |||||||| || | Sbjct 2171252 TCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCC 2171193 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| || || || |||||||| Sbjct 2171192 CAGTGAGGGTTTTCACAAAGATCTGCAT 2171165 Score = 150 bits (166), Expect = 3e-31 Identities = 161/209 (77%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| ||||| || ||||| || || || || || | || ||||| | Sbjct 2171144 CAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCGTCTTCGA 2171085 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| ||||| || || || || || || || || ||||||||||||||||| |||| Sbjct 2171084 GCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAA 2171025 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432 |||| ||||| || ||| |||||||| ||| | || || ||||| |||||||| || Sbjct 2171024 TCTTGGCCTTCACATTCTCAATGGTGTC-GCTGGGCTCCACCTCCAAAGTGATGGTCTTC 2170966 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| || || || |||||||| Sbjct 2170965 CCAGTGAGGGTTTTCACAAAGATCTGCAT 2170937 Score = 145 bits (160), Expect = 1e-29 Identities = 160/209 (77%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| ||||| |||||||| || || ||||| || | ||||| || | Sbjct 2170916 CAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAA 2170857 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| ||||| || || | || || || || || ||||||||||||||||| |||| Sbjct 2170856 GCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAA 2170797 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTT 68432 |||| ||||| || || || ||||| |||| || || || | |||||||||||| Sbjct 2170796 TCTTGGCCTTAACATTTTCAATCGTGTC-GCTGGGCTCCACCTCAAGGGTGATGGTTTTG 2170738 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| || || || |||||||| Sbjct 2170737 CCAGTGAGGGTTTTCACAAAGATCTGCAT 2170709 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| ||||| |||||||| || || || || || | || ||||| | Sbjct 2173291 CAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGAGTACGGCCGTCTTCGA 2173232 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || | || || || || || ||||||||||||||||| || | Sbjct 2173231 GCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGA 2173172 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||| ||| |||||||||||| | || || |||| |||||||| || | Sbjct 2173171 TCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCC 2173112 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| || || || |||||||| Sbjct 2173111 CAGTGAGGGTTTTCACAAAGATCTGCAT 2173084 >seq11085 Length=328877 Score = 129 bits (142), Expect = 1e-24 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || ||||| || || || ||||| || || ||||| || || ||||| Sbjct 148050 ACCAAATGGAGGGTGGATTCCTTCTGCATGTTGTAGTCTGAGAGGGTATGACCGTCTTCA 147991 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || || ||||| || ||||| || ||||| |||| ||| | || Sbjct 147990 AGCTGCTTACCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGAATATCTTCTTTGCCCTGG 147931 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||||||||| || || |||||||| ||||| || | ||| ||||| |||||| Sbjct 147930 ATCTTTGCCTTAACATTTTCAATGGTGTCACTAGATTCCACCTGCAACGTGAT-GTTTTT 147872 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||||||||| || | ||||||| Sbjct 147871 TCGGTCAGGGTCTTGACAAAGA-CTGCATT 147843 >seq16311 Length=87806 Score = 84.2 bits (92), Expect = 4e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416 || ||||| || || ||||| ||||| || |||||||||||| ||| | || || || Sbjct 5307 CCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC-GCTGGGCTCGACCTC 5249 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || |||||||| ||||| ||||| |||||||| Sbjct 5248 GAGGGTGATGGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCAT 5204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921430932946400