Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq9898 273 4e-68 seq9943 127 4e-24 seq11714 84.2 4e-11 >seq9898 Length=4754808 Score = 273 bits (302), Expect = 4e-68 Identities = 894/1384 (65%), Gaps = 40/1384 (3%) Strand=Plus/Minus Query 244046 TCGTTCCACAGGCCCAAGCGCTC---CAGCGCCTCGACCAGGTGCCTGTTCACCACCTGA 244102 || |||||||| ||| || || ||| ||| || ||| || ||| || | |||| Sbjct 101357 TCATTCCACAGTCCC---CGTTCAGTCAGGTCCTTGAGCAGATGTGGGTTTACAATCTGA 101301 Query 244103 AACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCC 244162 |||||||| || || || | ||| ||||| ||||||| || | |||||| ||| Sbjct 101300 AACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCA 101241 Query 244163 GTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTC 244222 ||||||| ||||| || || ||| ||||| |||||||| | || || ||| |||||| Sbjct 101240 TTGTTGCCTAGTATTTGTGCTGTGGAAGCAGTAGGCATGGGGGCCAACAACAGGCTGTTC 101181 Query 244223 CTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGG 244282 ||||| || || | || | ||| ||||||||||| | | | | Sbjct 101180 CTCACACCATGTTTAGTAATCTTCTCCTTAAGCAGCTTCCAGTCCCAGA-----GCGCAG 101126 Query 244283 TCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCC 244342 || | | || |||||||||| | ||||| | ||||| || || || || Sbjct 101125 TCGGCACCTTCT----CCCACATGTCGTATTGCAGAATGCCCTTACTCACTGGAGAACCT 101070 Query 244343 TCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCG 244402 ||| ||| || || ||||| | || | || ||||| | || ||||||||| Sbjct 101069 GGGTATGTCTCATAAGGCCCGTCTTTTTCTGCTAACTCGCAGCTTGCCTCCAGGGCGGCG 101010 Query 244403 TAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGG----TGAA 244458 ||||| || ||||| |||||| |||||| | || || ||| |||| | || Sbjct 101009 TAGTATATTGTCTCAAAGATCTGGATGTTCA-GCAGCTGGGCTT----CAGGACTTTCAA 100955 Query 244459 GGGGATGCC-CATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTC 244517 |||| | ||| | |||||| | || || || |||||||| || || ||||| || | Sbjct 100954 ATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACTCCAATTCCGATTGGCC 100895 Query 244518 TGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCT 244577 |||| |||||||| ||| | |||||| || || ||||| |||| ||| || | || Sbjct 100894 TGTGGCGCTTGTTCGAGTTCTCGGCTTCAGGGACTGGGTAGTAGTTAATGTCAATGATCT 100835 Query 244578 TGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGT 244637 |||||||||| | || | ||| ||| ||| | ||||| | Sbjct 100834 TGTTGAGGTTTCTTACAATTACTTTAGTGACAGAGGCAAGCTTTTTGAAGTCAAA----- 100780 Query 244638 AGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGC 244697 | ||| | ||| | | ||| || ||| || || | |||| ||| | Sbjct 100779 ---GGTCC---GTTCTGGAG----TAACATACATGTTAAGAGCAATAGAAGCCAAGTTAC 100730 Query 244698 AGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACT 244757 ||||||| ||||| || | | || |||| |||||||| ||||| | ||||||||| | Sbjct 100729 AGACGGCTACCTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAGTTACTGCATT 100670 Query 244758 TGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGA 244817 |||| ||||||| | ||| ||||| ||| ||| ||||| || ||||| | |||| Sbjct 100669 TGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCATCTTTGTACAACATGT 100610 Query 244818 AGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGA 244877 | || || || || ||| | | | || | | ||| | | | |||||||| Sbjct 100609 AAGGAGTTCCTGTTTCAGTCTGAGACTCTATGATGGCATACCACACCTGCTGAGCCTTGA 100550 Query 244878 CCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGC 244937 || || | |||| || ||||||||| |||||||| ||| ||||| | Sbjct 100549 CCACCCGTTTCACTCTGCCTTCCTGCTCGTAGCGAGTGTACAGCTTCTCAAACTCCTCCC 100490 Query 244938 CCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGT 244997 |||| ||| || || || |||||| |||||||| | | ||| || | || Sbjct 100489 CCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTGGTTGT 100430 Query 244998 CCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCC 245057 | ||||||| |||||| | || |||||||| ||||| | ||||||||| | | || Sbjct 100429 TTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGCATAGAAGAGGTCTCGTGCCC 100370 Query 245058 TCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCC 245117 ||||||| || |||||||||||| | | ||| | |||||||| ||||| | ||||| Sbjct 100369 TCTGCTCCTCTTTACCAGTGTTCTTCTTTAACTCAAGGAAGTCAAACACGTCAAAGTGCC 100310 Query 245118 AGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCC 245177 | ||||| | ||| | || | ||| || || || || ||||| || |||||||| | Sbjct 100309 ATGGCTCAAGGTACATGGCAAAGGCACCAGGTCGTTTATTGCCACCTTGGTCCACGTAGC 100250 Query 245178 TCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGC 245237 | | |||| | | | ||| | ||||| | ||| || || | || || || | Sbjct 100249 GCGCCGTGTTGTTGTACACCCTCAGCATTGGCACAAGGCCATTTGAATTACCATTTGTTC 100190 Query 245238 CCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGT 245297 | |||||| || | || | | ||| | | | || | || || || Sbjct 100189 CAGCAATGTAGCTTCCTGTTGATCTAATGCAGCTAACTGCTACACCAATCCCTCCTGCAG 100130 Query 245298 GCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACT 245357 ||||||||||| ||||| |||| || || ||||| || |||||||| || Sbjct 100129 ATTTGGAGATGAGAGCGCATTGTTTGAGTGTATCATAAATGCCATCAATGCTGTCATCCT 100070 Query 245358 TCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAG 245417 ||||| ||||| ||||| || ||||| || || | ||| | |||||||||| Sbjct 100069 TCATGGCCAGCAGGAAGCAACTAGAGAGCTGTGGTCTGTTGGTGCCTGCATTGAACAGAG 100010 Query 245418 TGGG 245421 |||| Sbjct 100009 TGGG 100006 >seq9943 Length=499256 Score = 127 bits (140), Expect = 4e-24 Identities = 106/127 (83%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || || |||| |||||||| ||||||||||| || |||||||| |||| |||| Sbjct 291953 TGGTGGCGTTCGCCGCTGTCGAGGGGATCTTCTTCTCTGGATCCTTCGCCGCCATTTTCT 292012 Query 42766 GGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| | ||| | |||||||||||| |||||||| ||||||||||||||||| Sbjct 292013 GGCTCAAGAAACGAGGCCT-GATGCCCGGACTGACCTTCTCCAACGAACTCATCAGCAGA 292071 Query 42825 GACGAGG 42831 ||||||| Sbjct 292072 GACGAGG 292078 >seq11714 Length=3826745 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||| || || ||||| | ||| ||| | ||||||| || ||||| ||| Sbjct 1500822 ACCTGAAACTCCCCTGAAAGCACCCTGCGAGTGTAAATGTTGCTGGTGTAAGGCTCAATG 1500881 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 || ||||||| || ||||| || ||| || || ||||| || | || || || Sbjct 1500882 GATTCATTGTTGCCAAGGATCTGGGCAGTGGAGGCTGTGGGCATAGGGGCCAGGAGGAGG 1500941 Query 244217 CTGTTCCTCACGCCGTGCCTCTGGAT 244242 ||||||||||| || ||||| || || Sbjct 1500942 CTGTTCCTCACTCCATGCCTGTGAAT 1500967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944143013531200