Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq9898 273 4e-68
seq9943 127 4e-24
seq11714 84.2 4e-11
>seq9898
Length=4754808
Score = 273 bits (302), Expect = 4e-68
Identities = 894/1384 (65%), Gaps = 40/1384 (3%)
Strand=Plus/Minus
Query 244046 TCGTTCCACAGGCCCAAGCGCTC---CAGCGCCTCGACCAGGTGCCTGTTCACCACCTGA 244102
|| |||||||| ||| || || ||| ||| || ||| || ||| || | ||||
Sbjct 101357 TCATTCCACAGTCCC---CGTTCAGTCAGGTCCTTGAGCAGATGTGGGTTTACAATCTGA 101301
Query 244103 AACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCC 244162
|||||||| || || || | ||| ||||| ||||||| || | |||||| |||
Sbjct 101300 AACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCA 101241
Query 244163 GTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTC 244222
||||||| ||||| || || ||| ||||| |||||||| | || || ||| ||||||
Sbjct 101240 TTGTTGCCTAGTATTTGTGCTGTGGAAGCAGTAGGCATGGGGGCCAACAACAGGCTGTTC 101181
Query 244223 CTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGG 244282
||||| || || | || | ||| ||||||||||| | | | |
Sbjct 101180 CTCACACCATGTTTAGTAATCTTCTCCTTAAGCAGCTTCCAGTCCCAGA-----GCGCAG 101126
Query 244283 TCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCC 244342
|| | | || |||||||||| | ||||| | ||||| || || || ||
Sbjct 101125 TCGGCACCTTCT----CCCACATGTCGTATTGCAGAATGCCCTTACTCACTGGAGAACCT 101070
Query 244343 TCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCG 244402
||| ||| || || ||||| | || | || ||||| | || |||||||||
Sbjct 101069 GGGTATGTCTCATAAGGCCCGTCTTTTTCTGCTAACTCGCAGCTTGCCTCCAGGGCGGCG 101010
Query 244403 TAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGG----TGAA 244458
||||| || ||||| |||||| |||||| | || || ||| |||| | ||
Sbjct 101009 TAGTATATTGTCTCAAAGATCTGGATGTTCA-GCAGCTGGGCTT----CAGGACTTTCAA 100955
Query 244459 GGGGATGCC-CATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTC 244517
|||| | ||| | |||||| | || || || |||||||| || || ||||| || |
Sbjct 100954 ATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACTCCAATTCCGATTGGCC 100895
Query 244518 TGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCT 244577
|||| |||||||| ||| | |||||| || || ||||| |||| ||| || | ||
Sbjct 100894 TGTGGCGCTTGTTCGAGTTCTCGGCTTCAGGGACTGGGTAGTAGTTAATGTCAATGATCT 100835
Query 244578 TGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGT 244637
|||||||||| | || | ||| ||| ||| | ||||| |
Sbjct 100834 TGTTGAGGTTTCTTACAATTACTTTAGTGACAGAGGCAAGCTTTTTGAAGTCAAA----- 100780
Query 244638 AGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGC 244697
| ||| | ||| | | ||| || ||| || || | |||| ||| |
Sbjct 100779 ---GGTCC---GTTCTGGAG----TAACATACATGTTAAGAGCAATAGAAGCCAAGTTAC 100730
Query 244698 AGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACT 244757
||||||| ||||| || | | || |||| |||||||| ||||| | ||||||||| |
Sbjct 100729 AGACGGCTACCTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAGTTACTGCATT 100670
Query 244758 TGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGA 244817
|||| ||||||| | ||| ||||| ||| ||| ||||| || ||||| | ||||
Sbjct 100669 TGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCATCTTTGTACAACATGT 100610
Query 244818 AGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGA 244877
| || || || || ||| | | | || | | ||| | | | ||||||||
Sbjct 100609 AAGGAGTTCCTGTTTCAGTCTGAGACTCTATGATGGCATACCACACCTGCTGAGCCTTGA 100550
Query 244878 CCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGC 244937
|| || | |||| || ||||||||| |||||||| ||| ||||| |
Sbjct 100549 CCACCCGTTTCACTCTGCCTTCCTGCTCGTAGCGAGTGTACAGCTTCTCAAACTCCTCCC 100490
Query 244938 CCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGT 244997
|||| ||| || || || |||||| |||||||| | | ||| || | ||
Sbjct 100489 CCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTGGTTGT 100430
Query 244998 CCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCC 245057
| ||||||| |||||| | || |||||||| ||||| | ||||||||| | | ||
Sbjct 100429 TTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGCATAGAAGAGGTCTCGTGCCC 100370
Query 245058 TCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCC 245117
||||||| || |||||||||||| | | ||| | |||||||| ||||| | |||||
Sbjct 100369 TCTGCTCCTCTTTACCAGTGTTCTTCTTTAACTCAAGGAAGTCAAACACGTCAAAGTGCC 100310
Query 245118 AGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCC 245177
| ||||| | ||| | || | ||| || || || || ||||| || |||||||| |
Sbjct 100309 ATGGCTCAAGGTACATGGCAAAGGCACCAGGTCGTTTATTGCCACCTTGGTCCACGTAGC 100250
Query 245178 TCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGC 245237
| | |||| | | | ||| | ||||| | ||| || || | || || || |
Sbjct 100249 GCGCCGTGTTGTTGTACACCCTCAGCATTGGCACAAGGCCATTTGAATTACCATTTGTTC 100190
Query 245238 CCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGT 245297
| |||||| || | || | | ||| | | | || | || || ||
Sbjct 100189 CAGCAATGTAGCTTCCTGTTGATCTAATGCAGCTAACTGCTACACCAATCCCTCCTGCAG 100130
Query 245298 GCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACT 245357
||||||||||| ||||| |||| || || ||||| || |||||||| ||
Sbjct 100129 ATTTGGAGATGAGAGCGCATTGTTTGAGTGTATCATAAATGCCATCAATGCTGTCATCCT 100070
Query 245358 TCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAG 245417
||||| ||||| ||||| || ||||| || || | ||| | ||||||||||
Sbjct 100069 TCATGGCCAGCAGGAAGCAACTAGAGAGCTGTGGTCTGTTGGTGCCTGCATTGAACAGAG 100010
Query 245418 TGGG 245421
||||
Sbjct 100009 TGGG 100006
>seq9943
Length=499256
Score = 127 bits (140), Expect = 4e-24
Identities = 106/127 (83%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765
|||| || || |||| |||||||| ||||||||||| || |||||||| |||| ||||
Sbjct 291953 TGGTGGCGTTCGCCGCTGTCGAGGGGATCTTCTTCTCTGGATCCTTCGCCGCCATTTTCT 292012
Query 42766 GGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824
|||||||| | ||| | |||||||||||| |||||||| |||||||||||||||||
Sbjct 292013 GGCTCAAGAAACGAGGCCT-GATGCCCGGACTGACCTTCTCCAACGAACTCATCAGCAGA 292071
Query 42825 GACGAGG 42831
|||||||
Sbjct 292072 GACGAGG 292078
>seq11714
Length=3826745
Score = 84.2 bits (92), Expect = 4e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156
||||||||||| || || ||||| | ||| ||| | ||||||| || ||||| |||
Sbjct 1500822 ACCTGAAACTCCCCTGAAAGCACCCTGCGAGTGTAAATGTTGCTGGTGTAAGGCTCAATG 1500881
Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216
|| ||||||| || ||||| || ||| || || ||||| || | || || ||
Sbjct 1500882 GATTCATTGTTGCCAAGGATCTGGGCAGTGGAGGCTGTGGGCATAGGGGCCAGGAGGAGG 1500941
Query 244217 CTGTTCCTCACGCCGTGCCTCTGGAT 244242
||||||||||| || ||||| || ||
Sbjct 1500942 CTGTTCCTCACTCCATGCCTGTGAAT 1500967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944143013531200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |