Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq10290 123 6e-23
seq16311 89.7 1e-12
>seq10290
Length=4455921
Score = 123 bits (136), Expect = 6e-23
Identities = 168/233 (72%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| ||||| | || | || || ||||| | ||| || ||||||||||| ||||||
Sbjct 2171394 TGGCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATATTGTAGTCG 2171335
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| ||| ||||| || ||||| | || || || || ||||||| | ||| || ||||
Sbjct 2171334 GAGAGGGTGCGCCCATCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTG---ATCT 2171278
Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420
||| || ||||| || |||||||| || || |||||||| || || | || || |
Sbjct 2171277 GGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGC 2171218
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || ||||| |||||||| || || || || || || ||||||||
Sbjct 2171217 TCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2171165
Score = 113 bits (124), Expect = 1e-19
Identities = 166/234 (71%), Gaps = 6/234 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||| | || || | |||| ||| |||||| ||||| || ||||||| |
Sbjct 2173082 CCACCTCTGAGGCGCAGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAG 2173023
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || || || || || || || | |||||| ||||||
Sbjct 2173022 AGGGTACGCCCATCCTCAAGCTGCTTGCCAGCAAAAATAAGCCTTTGTTGA---TCTGGG 2172966
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||| || ||||| || || |||||||||||||| || | || || | ||
Sbjct 2172965 GGAATGCCTTCCTTGTCCTGAATCTTAGCTTTCACGTTTTCAATGGTGTCACTGGGCTCA 2172906
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|| || || || || || || ||||| || |||||||| || || ||||| |||
Sbjct 2172905 ACCTCAAGGGTAATAGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCATGATG 2172852
>seq16311
Length=87806
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429
|| || ||||||||||| || || ||||| || || || | ||||| | || || |||
Sbjct 5307 CCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCGACCTCG 5248
Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| |||||||| || |||||||| ||||| ||||||||
Sbjct 5247 AGGGTGATGGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCAT 5204
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343
|||| ||||| || ||||||| || ||||||||||| || | ||||| ||||||||||
Sbjct 7489 CTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGTTTGCCTGCGAAGA 7430
Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCT 288372
|||||||||| ||| | |||||||||
Sbjct 7429 TCAGACGCTGCTGATCAGGGGGGATTCCT 7401
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179403199968360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |