Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq10191 95.1 1e-14 seq11085 93.3 5e-14 seq9094 93.3 5e-14 seq8266 93.3 5e-14 seq3331 93.3 5e-14 seq10290 91.5 2e-13 seq3330 91.5 2e-13 seq2888 86.0 7e-12 >seq10191 Length=449533 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 ||||||||| || | | ||| |||||| ||||||||||||||||||||| |||||||| Sbjct 227001 ATTTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 227060 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 227061 CACTATACTAACGAGGA 227077 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/84 (85%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 56998 AAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||||| || |||| || | | |||||||||| ||||||||||||||||||||| | Sbjct 234300 AAAAATATTTGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 234359 Query 57055 TACTCACCACTATACTACCGAGGA 57078 ||||||||||||||||| |||||| Sbjct 234360 TACTCACCACTATACTAACGAGGA 234383 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 |||| |||| || | | ||| |||||| ||||||||||||||||||||| |||||||| Sbjct 230321 ATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 230380 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 230381 CACTATACTAACGAGGA 230397 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 |||| |||| || | | ||| |||||| ||||||||||||||||||||| |||||||| Sbjct 231205 ATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 231264 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 231265 CACTATACTAACGAGGA 231281 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||| Sbjct 229475 TTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 229534 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 229535 ACTATACTAACGAGGA 229550 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||| Sbjct 236734 TTTACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 236793 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 236794 ACTATACTAACGAGGA 236809 >seq11085 Length=328877 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41984 TCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAG 42043 |||||| |||| | ||||||||| | ||| ||||| || || ||||| || | || Sbjct 148066 TCCTCTCAAACATAGCACCAAATGGAGGGTGGATTCCTTCTGCATGTTGTAGTCTGAGAG 148007 Query 42044 AGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCAC 42103 || | |||| || |||||||||||||| || || |||| ||||||||| | || | Sbjct 148006 GGTATGACCGTCTTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGAAT 147947 Query 42104 GCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATC 42163 || ||| || ||| ||| || | | | | ||||| || |||||||| | Sbjct 147946 ATCTTCTTTGCCCTGGATCTTTGCCTTAACATTTTCAATGGTGTCACTAGATTCCACCTG 147887 Query 42164 GACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | |||||| ||||| | || || ||||| ||||||| |||||||| Sbjct 147886 CAACGTGAT-GTTTTTTCGGTCAGGGTCTTGACAAAGA-CTGCATTTT 147841 >seq9094 Length=692760 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| |||| |||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 102687 AAAGATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 102746 Query 57058 TCACCACTATACTACCGAGGA 57078 |||||||||||||| |||||| Sbjct 102747 TCACCACTATACTAACGAGGA 102767 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| |||| |||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 112272 AAATATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 112331 Query 57058 TCACCACTATACTACCGAGGA 57078 |||||||||||||| |||||| Sbjct 112332 TCACCACTATACTAACGAGGA 112352 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 |||| |||| || | | ||| |||||| ||||||||||||||||||||| |||||||| Sbjct 102214 ATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 102273 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 102274 CACTATACTAACGAGGA 102290 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||| Sbjct 103701 TTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 103760 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 103761 ACTATACTAACGAGGA 103776 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 96688 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 96747 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 96748 TACTAACGAGGA 96759 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 100492 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 100551 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 100552 TACTAACGAGGA 100563 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 111025 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 111084 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 111085 TACTAACGAGGA 111096 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | ||| |||||| |||||||||| |||||||||| ||||||||| Sbjct 97142 TTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCCTGACAGGCGGGGATACTCACC 97201 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 97202 ACTATACTAACGAGGA 97217 >seq8266 Length=1278483 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 1027587 TTATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 1027528 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 1027527 ACTATACTAACGAGGA 1027512 >seq3331 Length=1622721 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || || |||| |||| || | | |||||||||| ||||||||||||||||||||| | Sbjct 1382089 ATAAAGAATTGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 1382148 Query 57055 TACTCACCACTATACTACCGAGGA 57078 ||||||||||||||||| |||||| Sbjct 1382149 TACTCACCACTATACTAACGAGGA 1382172 >seq10290 Length=4455921 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||||| || | ||| | ||| || || || || ||||| |||| Sbjct 2170936 ACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 2170877 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || || || || | | |||||| || | || Sbjct 2170876 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGG 2170817 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCA 42159 | || ||||||||| ||| | || | | | | | || ||||||||| | |||| Sbjct 2170816 AATGCCTTCCTTGTCC-TGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCA 2170758 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | || | |||||||||||||| || || || || |||||||| ||||| || Sbjct 2170757 CCTCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 2170706 >seq3330 Length=8958070 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| |||||||||| Sbjct 5184714 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 5184773 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 5184774 CTATACTAACGAGGA 5184788 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 7078557 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7078616 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 7078617 TACTAACGAGGA 7078628 >seq2888 Length=35643 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 ||||||| | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 13378 CTCCTCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 13437 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 13438 TACTAACGAGGA 13449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543099947540800