Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq10191 95.1 1e-14
seq11085 93.3 5e-14
seq9094 93.3 5e-14
seq8266 93.3 5e-14
seq3331 93.3 5e-14
seq10290 91.5 2e-13
seq3330 91.5 2e-13
seq2888 86.0 7e-12
>seq10191
Length=449533
Score = 95.1 bits (104), Expect = 1e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061
||||||||| || | | ||| |||||| ||||||||||||||||||||| ||||||||
Sbjct 227001 ATTTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 227060
Query 57062 CACTATACTACCGAGGA 57078
|||||||||| ||||||
Sbjct 227061 CACTATACTAACGAGGA 227077
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/84 (85%), Gaps = 3/84 (4%)
Strand=Plus/Plus
Query 56998 AAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054
|||||| || |||| || | | |||||||||| ||||||||||||||||||||| |
Sbjct 234300 AAAAATATTTGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 234359
Query 57055 TACTCACCACTATACTACCGAGGA 57078
||||||||||||||||| ||||||
Sbjct 234360 TACTCACCACTATACTAACGAGGA 234383
Score = 89.7 bits (98), Expect = 6e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061
|||| |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||
Sbjct 230321 ATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 230380
Query 57062 CACTATACTACCGAGGA 57078
|||||||||| ||||||
Sbjct 230381 CACTATACTAACGAGGA 230397
Score = 89.7 bits (98), Expect = 6e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061
|||| |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||
Sbjct 231205 ATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 231264
Query 57062 CACTATACTACCGAGGA 57078
|||||||||| ||||||
Sbjct 231265 CACTATACTAACGAGGA 231281
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062
||| |||| || | | ||| |||||| ||||||||||||||||||||| |||||||||
Sbjct 229475 TTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 229534
Query 57063 ACTATACTACCGAGGA 57078
||||||||| ||||||
Sbjct 229535 ACTATACTAACGAGGA 229550
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062
||| |||| || | | ||| |||||| ||||||||||||||||||||| |||||||||
Sbjct 236734 TTTACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 236793
Query 57063 ACTATACTACCGAGGA 57078
||||||||| ||||||
Sbjct 236794 ACTATACTAACGAGGA 236809
>seq11085
Length=328877
Score = 93.3 bits (102), Expect = 5e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41984 TCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAG 42043
|||||| |||| | ||||||||| | ||| ||||| || || ||||| || | ||
Sbjct 148066 TCCTCTCAAACATAGCACCAAATGGAGGGTGGATTCCTTCTGCATGTTGTAGTCTGAGAG 148007
Query 42044 AGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCAC 42103
|| | |||| || |||||||||||||| || || |||| ||||||||| | || |
Sbjct 148006 GGTATGACCGTCTTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGAAT 147947
Query 42104 GCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATC 42163
|| ||| || ||| ||| || | | | | ||||| || |||||||| |
Sbjct 147946 ATCTTCTTTGCCCTGGATCTTTGCCTTAACATTTTCAATGGTGTCACTAGATTCCACCTG 147887
Query 42164 GACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
| |||||| ||||| | || || ||||| ||||||| ||||||||
Sbjct 147886 CAACGTGAT-GTTTTTTCGGTCAGGGTCTTGACAAAGA-CTGCATTTT 147841
>seq9094
Length=692760
Score = 93.3 bits (102), Expect = 5e-14
Identities = 69/81 (85%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||| |||| |||| || | | ||| |||||| ||||||||||||||||||||| ||||
Sbjct 102687 AAAGATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 102746
Query 57058 TCACCACTATACTACCGAGGA 57078
|||||||||||||| ||||||
Sbjct 102747 TCACCACTATACTAACGAGGA 102767
Score = 93.3 bits (102), Expect = 5e-14
Identities = 69/81 (85%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
||| |||| |||| || | | ||| |||||| ||||||||||||||||||||| ||||
Sbjct 112272 AAATATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 112331
Query 57058 TCACCACTATACTACCGAGGA 57078
|||||||||||||| ||||||
Sbjct 112332 TCACCACTATACTAACGAGGA 112352
Score = 89.7 bits (98), Expect = 6e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061
|||| |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||
Sbjct 102214 ATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 102273
Query 57062 CACTATACTACCGAGGA 57078
|||||||||| ||||||
Sbjct 102274 CACTATACTAACGAGGA 102290
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062
||| |||| || | | ||| |||||| ||||||||||||||||||||| |||||||||
Sbjct 103701 TTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 103760
Query 57063 ACTATACTACCGAGGA 57078
||||||||| ||||||
Sbjct 103761 ACTATACTAACGAGGA 103776
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||||
Sbjct 96688 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 96747
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 96748 TACTAACGAGGA 96759
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||||
Sbjct 100492 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 100551
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 100552 TACTAACGAGGA 100563
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||||
Sbjct 111025 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 111084
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 111085 TACTAACGAGGA 111096
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062
||| |||| || | | ||| |||||| |||||||||| |||||||||| |||||||||
Sbjct 97142 TTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCCTGACAGGCGGGGATACTCACC 97201
Query 57063 ACTATACTACCGAGGA 57078
||||||||| ||||||
Sbjct 97202 ACTATACTAACGAGGA 97217
>seq8266
Length=1278483
Score = 93.3 bits (102), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062
|| ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1027587 TTATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 1027528
Query 57063 ACTATACTACCGAGGA 57078
||||||||| ||||||
Sbjct 1027527 ACTATACTAACGAGGA 1027512
>seq3331
Length=1622721
Score = 93.3 bits (102), Expect = 5e-14
Identities = 71/84 (85%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054
|| || |||| |||| || | | |||||||||| ||||||||||||||||||||| |
Sbjct 1382089 ATAAAGAATTGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 1382148
Query 57055 TACTCACCACTATACTACCGAGGA 57078
||||||||||||||||| ||||||
Sbjct 1382149 TACTCACCACTATACTAACGAGGA 1382172
>seq10290
Length=4455921
Score = 91.5 bits (100), Expect = 2e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||| | ||||| || | ||| | ||| || || || || ||||| ||||
Sbjct 2170936 ACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 2170877
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| || || | || || |||||||| || || || || | | |||||| || | ||
Sbjct 2170876 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGG 2170817
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCA 42159
| || ||||||||| ||| | || | | | | | || ||||||||| | ||||
Sbjct 2170816 AATGCCTTCCTTGTCC-TGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCA 2170758
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
| || | |||||||||||||| || || || || |||||||| ||||| ||
Sbjct 2170757 CCTCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 2170706
>seq3330
Length=8958070
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063
|| |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 5184714 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 5184773
Query 57064 CTATACTACCGAGGA 57078
|||||||| ||||||
Sbjct 5184774 CTATACTAACGAGGA 5184788
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 7078557 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7078616
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 7078617 TACTAACGAGGA 7078628
>seq2888
Length=35643
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
||||||| | | |||||||||| ||||| |||||||||||||||| ||||| ||||||
Sbjct 13378 CTCCTCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 13437
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 13438 TACTAACGAGGA 13449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543099947540800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |