Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq10290 131 2e-25 seq11085 100 3e-16 seq9898 82.4 8e-11 >seq10290 Length=4455921 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || |||||||| ||||||||||| || | | ||||| ||||| Sbjct 2171148 AGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCGTCT 2171089 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| |||| |||| |||||| || || ||||| ||||| || || Sbjct 2171088 TCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 2171029 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || || | || ||||| || | ||| | |||| Sbjct 2171028 TGAATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAAGTGATGGTC 2170969 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||||| || || || ||||| Sbjct 2170968 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2170937 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || ||||| || ||||| || | || ||||||| | ||| Sbjct 2171376 AGGACAAGATGGAGGGTGGACTCCTTTTGGATATTGTAGTCGGAGAGGGTGCGCCCATCT 2171317 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||||||| | || | || |||||| || || ||||| ||||| || || Sbjct 2171316 TCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 2171257 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || ||||| || | ||| | |||| Sbjct 2171256 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 2171197 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||||| || || || ||||| Sbjct 2171196 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2171165 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || |||||||| || |||||||| || | || |||||| | || Sbjct 2170920 AGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCC 2170861 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||||||| | || | || |||||| || || ||||| ||||| || || Sbjct 2170860 TCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 2170801 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | || ||||| || | || | ||| Sbjct 2170800 TGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCACCTCAAGGGTGATGGTT 2170741 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| || | ||||| || || || ||||| || Sbjct 2170740 TTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 2170706 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| |||| || |||||||| || |||||||| || | || ||| ||| | || Sbjct 2173067 AGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGCCCATCC 2173008 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| ||| |||| |||| || || || || ||||| ||||| || || Sbjct 2173007 TCAAGCTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGGGGAATGCCTTCCTTGTCC 2172948 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| || || | || |||| || || || || | || | || Sbjct 2172947 TG-AATCTTAGCTTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATAGT 2172889 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | || || || || |||||||| Sbjct 2172888 TTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 2172856 >seq11085 Length=328877 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | || ||||| || || |||||||| |||| || ||| | ||||| Sbjct 148053 AGCACCAAATGGAGGGTGGATTCCTTCTGCATGTTGTAGTCTGAGAGGGTATGACCGTCT 147994 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| || ||| |||| || | ||||||||| |||||||| ||||||| | Sbjct 147993 TCAAGCTGCTTACCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGAATATCTTCTTTGCCC 147934 Query 64352 TGTATTTTTTGCTTTACA 64369 || || ||| ||| ||| Sbjct 147933 TGGATCTTTGCCTTAACA 147916 >seq9898 Length=4754808 Score = 82.4 bits (90), Expect = 8e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 154586 AGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCA 154645 ||| |||||||| || ||||| | || || || | || | |||||| || | ||| Sbjct 100743 AGAAGCCAAGTTACAGACGGCTACCTCATCTTTGCTTGTATACTCCACAATCTCAGTGCA 100684 Query 154646 CAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTC 154705 ||| ||||||||| || ||||||| || | |||||| || |||| || || || Sbjct 100683 CAAGTTACTGCATTTGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCATC 100624 Query 154706 TTTGTACAAAATGTACGGGGTGCCCGTTTC 154735 ||||||||| ||||| || || || ||||| Sbjct 100623 TTTGTACAACATGTAAGGAGTTCCTGTTTC 100594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499540998792800