Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq9898 98.7 1e-15 >seq9898 Length=4754808 Score = 98.7 bits (108), Expect = 1e-15 Identities = 343/526 (65%), Gaps = 16/526 (3%) Strand=Plus/Plus Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 || || ||||| | || || ||||| || || ||||| |||| | ||||||| ||||| Sbjct 100189 GGAACAAATGGTAATTCAAATGGCCTTGTGCCAATGCTGAGGGTGTACAACAACACGGCG 100248 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 |||||||||||||| ||||| | | ||| | || || | || || ||||| Sbjct 100249 CGCTACGTGGACCAAGGTGGCAATAAACGACCTGGTGCCTTTGCCATGTACCTTGAGCCA 100308 Query 94201 TGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 |||||| |||||| | ||| | || | |||||| || || || | || Sbjct 100309 TGGCACTTTGACGTGTTTGACTTCCTTGAGTTAAAGAAGAACACTGGTAAAGAGGAGCAG 100368 Query 94261 AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 ||||| ||||||||||||| || || ||| | || || | || ||||| | || || Sbjct 100369 AGGGCACGAGACCTCTTCTATGCCCTATGGATCCCTGATTTGTTCATGAAGAGGGTGGAA 100428 Query 94321 AAAAACTCCGCCTGGAGTCTTT--TTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTT 94378 || ||| | ||| |||||| | || |||| ||| || || || ||| || || Sbjct 100429 AACAACCAGGACTG--GTCTTTGATGTGCCCCAGTGAGTGCCCTGGGCTGGATGAGTGTT 100486 Query 94379 GTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC-CAG-GAA 94436 | || | ||||| | |||| |||| ||||| ||||| ||||| || ||| Sbjct 100487 GGGGGGAGGAGTTTGAGAAGCTGTACACTCGCTACGA---GCAGG--AAGGCAGAGTGAA 100541 Query 94437 ---GGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 ||| | | ||| | || ||||| || ||| | || ||| || || || Sbjct 100542 ACGGGTGGTCAAGGCTCAGCAGGTGTGGTATGCCATCATAGAGTCTCAGACTGAAACAGG 100601 Query 94494 TACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCG 94552 || || ||||| |||| ||| || |||| ||| ||| || |||||| | | | Sbjct 100602 AACTCCTTACATGTTGTACAAAGATGCCTGT-AACAGGAAGAGTAATCAGCAGAATTTGG 100660 Query 94553 GGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATAC 94598 | ||||| || || ||||||| |||||||| |||||||| Sbjct 100661 GCACTATCAAATGCAGTAACTTGTGCACTGAGATTGTGGAGTATAC 100706 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 95074 AAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAG 95133 ||||| ||||||| ||| ||| | ||||||||||||| || || ||||| || || Sbjct 101167 AAACATGGTGTGAGGAACAGCCTGTTGTTGGCCCCCATGCCTACTGCTTCCACAGCACAA 101226 Query 95134 ATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGC-GGGT 95192 || || |||||||| ||||| ||||| ||| |||| |||| | ||| ||| || | || Sbjct 101227 ATACTAGGCAACAATGAGTCCATCGAAGCCTACACCAGCAACATCTAC-ACACGCAGAGT 101285 Query 95193 GCTCGCCGGGGAATT 95207 ||| |||| || || Sbjct 101286 CCTCTCCGGAGAGTT 101300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494620421255200