Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9898 100 3e-16 seq10290 98.7 1e-15 seq11085 82.4 8e-11 >seq9898 Length=4754808 Score = 100 bits (110), Expect = 3e-16 Identities = 427/668 (64%), Gaps = 9/668 (1%) Strand=Plus/Minus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | ||| | ||| || || |||||||||||||| || |||| || || Sbjct 101267 TTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCTAGTATTTGTGCTGTGGAAGCAGTA 101208 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 |||||| |||| ||||| |||| || || || ||| | ||||| | | Sbjct 101207 GGCATGGGGGCCAACAACAGGCTGTTCCTCACACCATGTTTAGTAATCTTCTCCTTAAGC 101148 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 || ||| ||||| ||||| | ||| | | |||||||||||| || | | || Sbjct 101147 AGCTTCCAGTCCCAGAGCGCAGTCGGCACCTTCTCCCACATGTCGTATTGCAGAATGCCC 101088 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAG 153314 ||| | ||| || | | || || ||||| || || | |||||| Sbjct 101087 TTACTCACTGGAGAACCTGGGTATGTCTCATAAGGCCCGTCTTTTTCTGCTAACTCGCAG 101028 Query 153315 CTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCT 153374 || ||||| || ||| | |||||||| || || ||| || | || || | ||| Sbjct 101027 CTTGCCTCCAGGGCGGCGTAGTATATTGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCT 100968 Query 153375 TCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCG 153434 || || || | || |||| || | ||||| || || |||||||| | || Sbjct 100967 TCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACTCCA 100908 Query 153435 ACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-GCTATGGGATAGTGATT 153493 | ||||| || | || || ||| | | ||| || | | || |||| || Sbjct 100907 ATTCCGATTGGCCTGTGGCGCTTGTTCGAGTTC-TCGGCTTCAGGGACTGGGTAGTAGTT 100849 Query 153494 GCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTC 153553 || || || ||||||||||| | || | |||||||| | | ||| || | Sbjct 100848 AATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACAGAGGCAAGCTTTTT 100789 Query 153554 GAAATCATAGGTCATTTCGTCGACGCGTACGCATCGAT--TCACGGCAATAGACGCCAGA 153611 ||| ||| ||||| ||| | || ||| ||| || | | |||||||| |||| Sbjct 100788 GAAGTCAAAGGTCCGTTC-TGGA---GTAA-CATACATGTTAAGAGCAATAGAAGCCAAG 100734 Query 153612 TTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTG 153671 ||||||||||| ||| || | | |||| ||| ||||| | ||| | ||| ||| Sbjct 100733 TTACAGACGGCTACCTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAGTTACTG 100674 Query 153672 CATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGC 153731 ||||| || ||||||||| |||||||| || || | || || || |||||| | | | Sbjct 100673 CATTTGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCATCTTTGTACAAC 100614 Query 153732 ATGTACGG 153739 ||||| || Sbjct 100613 ATGTAAGG 100606 >seq10290 Length=4455921 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||||| || | ||| | | | || || || |||||||||||||| | Sbjct 2171163 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGAC 2171104 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| ||||| || || |||| | | || || | ||| || || || || Sbjct 2171103 AGAGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGA 2171044 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | || | || | | || | ||||||| | | |||||| Sbjct 2171043 ATGCCTTCCTTGTC-CTGAATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCAC 2170985 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| || ||||| ||||| |||||||| Sbjct 2170984 CTCCAAAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2170937 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||||| || | ||| | | | || || || || ||||||||||| Sbjct 2170935 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 2170876 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || |||| | |||| | | ||| || || || || Sbjct 2170875 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGA 2170816 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | || | |||| | ||| | |||||| | | |||||| Sbjct 2170815 ATGCCTTCCTTGTC-CTGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCAC 2170757 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| ||||| || ||||| ||||| |||||||| Sbjct 2170756 CTCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 2170709 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||||| || | ||| | | | ||||||||||| || ||||||||| Sbjct 2171392 GCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATATTGTAGTCGGA 2171333 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || ||| || || || || || |||| | |||| | | ||| || || || || Sbjct 2171332 GAGGGTGCGCCCATCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGG 2171273 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | |||||| | | |||||| Sbjct 2171272 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCAC 2171213 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| || ||||| ||||| |||||||| Sbjct 2171212 CTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2171165 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||| | ||| | ||| | | | || || || || ||||||||||| || |||||| Sbjct 2173299 ACGAAGAACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGAGTACGGCC 2173240 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||| ||||| || || || | | |||| | | ||| || || || || || ||||| || Sbjct 2173239 GTCTTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTT 2173180 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| ||| || || | | || | |||||| | | ||||||||| | || | Sbjct 2173179 GTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGAT 2173120 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || ||||| || ||||| ||||| |||||||| Sbjct 2173119 GGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2173084 >seq11085 Length=328877 Score = 82.4 bits (90), Expect = 8e-11 Identities = 154/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 138391 CCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATA 138450 |||| ||||| | || ||||| | | | || ||||| || ||||||||||| | Sbjct 148065 CCTCTCAAACATAGCACCAAATGGAGGGTGGATTCCTTCTGCATGTTGTAGTCTGAGAGG 148006 Query 138451 GTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATA 138510 ||| | ||| || || || ||||| | | | || || | ||| ||||| ||||| ||| Sbjct 148005 GTATGACCGTCTTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGAATA 147946 Query 138511 CCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCG 138570 |||||||| | ||| ||| || | | ||| | |||||| | || ||||||| Sbjct 147945 TCTTCTTTGCCCTGGATCTTTGCCTTAACATTTTCAATGGTGTCACTAGATTCCACCTGC 147886 Query 138571 ACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | ||| | ||||| | ||||| || || ||||| | |||||| Sbjct 147885 AACGTGA-TGTTTTTTCGGTCAGGGTCTTGACAAAGA-CTGCAT 147844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496159301486400