Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq9898 132 5e-26 >seq9898 Length=4754808 Score = 132 bits (146), Expect = 5e-26 Identities = 490/746 (66%), Gaps = 30/746 (4%) Strand=Plus/Minus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGC-GCCTCAG 146102 ||| |||||| |||| |||| || | ||||||||| |||| ||| || | || | | Sbjct 101333 AGGTCCTTGAGCAGATGTGGGTTTACAATCTGAAACTCTCCGGAGAGGACTCTGCGTGTG 101274 Query 146103 ATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGT 146162 || | |||||||||| | | |||| ||||| ||||| || ||||| || || || | Sbjct 101273 -TAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCTAGTATTTGTGCTGTGGA 101215 Query 146163 AGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTC 146222 ||| ||||||||| |||| || || ||| ||||| || ||| | |||||| || Sbjct 101214 AGCAGTAGGCATGGGGGCCAACAACAGGCTGTTCCTCACACCATGTTTAGTAATCTTCTC 101155 Query 146223 CC---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTA 146279 | | || || ||| | ||| | | | || || | | | ||||||| Sbjct 101154 CTTAAGCAGCTT---CCAGTCCCAGA---GCGCAGTCGGCACCTTCTCCCACATGTCGTA 101101 Query 146280 ATGCATAGTGCCGCGGA---ACAGGGGGCTATTCTCG-TACGATTCATAAGGACCGTCGA 146335 |||| | |||| | | || || | | || | || | |||||||| ||||| Sbjct 101100 TTGCAGAATGCC-CTTACTCACTGGAG---AACCTGGGTATGTCTCATAAGGCCCGTCTT 101045 Query 146336 TCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGT 146395 | | || | |||||||| || ||||| || | ||||||| ||||| |||| | Sbjct 101044 TTTCTGCTAACTCGCAGCTTGCCTCCAGGGCGGCGTAGTATATTGTCTCAAAGATCTGGA 100985 Query 146396 AGTTGACGCTCCTGGCCTCCTCG-CTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTC 146453 ||| | || |||| || | | || || | || ||| || | || | ||||| || Sbjct 100984 TGTTCA-GCAGCTGGGCTTCAGGACTTTCAAATGG-ATAACGCATGAGAATGAAGGCATC 100927 Query 146454 GGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCC 146513 ||||||||||| | || | || | || | ||| |||||| |||| | || | Sbjct 100926 TGCGAGACCCTGCACTCCAATTCCGATTGGCCTGTGGCGCTTGTTCGAGTTCTCGGCTTC 100867 Query 146514 CGC-AGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCG 146572 | | |||| |||| ||| |||| |||||||||||||| || | || | | ||| | Sbjct 100866 AGGGACTGGG-TAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAG 100808 Query 146573 TCAAACGATTCA-GCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTG 146631 | | | || || || ||||||| || ||| | || || || |||| Sbjct 100807 TGACA-GAGGCAAGCTTTTTGAAGTCAAAGGTCC--GTTCTGGAGTA-ACATACATGTTA 100752 Query 146632 ACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATC 146691 | || ||||| ||||||||||| ||||| ||| || ||| ||||| ||||||| Sbjct 100751 AGAGCAATAGAAGCCAAGTTACAGACGGCTACCTCATCTTTGCTTGTATACTCCACAATC 100692 Query 146692 TCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTG 146751 || | ||| | ||| ||||| ||||| |||||||||| | || ||||| | |||| Sbjct 100691 TCAGTGCACAAGTTACTGCATTTGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTA 100632 Query 146752 CAGGGGTCCTTGTAGAGCATGTACGG 146777 |||| || ||||| | |||||| || Sbjct 100631 CAGGCATCTTTGTACAACATGTAAGG 100606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475402014708800