Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq8213 111 2e-19 seq11603 98.7 1e-15 >seq8213 Length=7130527 Score = 111 bits (122), Expect = 2e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 ||||| | ||||| ||||| || || || | || || || ||||| |||||||||||| Sbjct 3304015 GTTGCAGAATTCACTATGTCAAATCCAACTTTGCCTCCAAATGTGCTTGGTTTCCAGTAC 3304074 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || || ||| |||| ||| || ||||||| |||||| |||||||||| ||| Sbjct 3304075 GTGGGAGAACATATGGGGTTCCCCAATAGTCCTTTCAGGGAAAAGGGAGCCCCCATCTCC 3304134 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTC 9093 | |||||||| || || || || || ||||| | ||| || Sbjct 3304135 ACCATGCTCTCTCCAAATATTGCTCCTGGACGTGTTTTCTC 3304175 >seq11603 Length=3851240 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || | |||||| || || || | || ||||| ||||| || |||||||| | Sbjct 1964553 GCTGTGTTGATGATGTCGAAGCCCACCTGGCCTCCGAAAGTGCTTGGCTTCCAGTATTCA 1964494 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| |||| ||||||| ||||| | ||| || || || |||| || | Sbjct 1964493 GGGGAGCAGATGGCGTTTCCCATGAGGCCTTTGAGGGAGAAGGGTGCTCCCATTTCCACC 1964434 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| ||||| ||||| | || || ||||| | | || | ||| || Sbjct 1964433 ATGGTCTCCCCGAAAATGGCGTTCTCTCTGGGCTTCTCGACCAGCAGACCCGGGTACAGC 1964374 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || || || |||| || || | | ||||| ||| || || || || || ||| Sbjct 1964373 TCCACGGCGTCCACGTGTCCGTACATCTCCTCCAAAATGGCTGCCATTTCTTTATCTCCT 1964314 Query 9176 ACAA 9179 |||| Sbjct 1964313 ACAA 1964310 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 9753 CTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCT 9812 ||| || |||| | ||||| | | || || || || || || | ||||||||| | Sbjct 1961622 CTCATCGTCCCAGTAAGGGTGGACCTCCTTTAGCACGTCACATACTCGGTTGTGTTCACG 1961563 Query 9813 CAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCAC 9872 ||||| ||||| ||||||||||| | ||| || || | ||||| |||||| |||||| Sbjct 1961562 AAGCCAGATGGTAGCGTACATCATGAGACCAGGGACCAGGCCAAAAGCTTCATGCCCCAC 1961503 Query 9873 TGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTT 9932 |||||| | | | || || || | ||| | ||| |||| | ||| | ||| || Sbjct 1961502 TGCAAACCTCTGGGACTCTGGGACATGGGGAGGATAGTGCATGTCCACACCGACCTCCTT 1961443 Query 9933 GACGGTGGGGGGATACATTTCACC 9956 || || ||||| ||||| || || Sbjct 1961442 CACTGTCGGGGGGTACATCTCTCC 1961419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723577645508000