Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq8213 111 2e-19
seq11603 98.7 1e-15
>seq8213
Length=7130527
Score = 111 bits (122), Expect = 2e-19
Identities = 121/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
||||| | ||||| ||||| || || || | || || || ||||| ||||||||||||
Sbjct 3304015 GTTGCAGAATTCACTATGTCAAATCCAACTTTGCCTCCAAATGTGCTTGGTTTCCAGTAC 3304074
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
| || || || ||| |||| ||| || ||||||| |||||| |||||||||| |||
Sbjct 3304075 GTGGGAGAACATATGGGGTTCCCCAATAGTCCTTTCAGGGAAAAGGGAGCCCCCATCTCC 3304134
Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTC 9093
| |||||||| || || || || || ||||| | ||| ||
Sbjct 3304135 ACCATGCTCTCTCCAAATATTGCTCCTGGACGTGTTTTCTC 3304175
>seq11603
Length=3851240
Score = 98.7 bits (108), Expect = 1e-15
Identities = 168/244 (69%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995
|| || || | |||||| || || || | || ||||| ||||| || |||||||| |
Sbjct 1964553 GCTGTGTTGATGATGTCGAAGCCCACCTGGCCTCCGAAAGTGCTTGGCTTCCAGTATTCA 1964494
Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055
|||||||||||| |||| ||||||| ||||| | ||| || || || |||| || |
Sbjct 1964493 GGGGAGCAGATGGCGTTTCCCATGAGGCCTTTGAGGGAGAAGGGTGCTCCCATTTCCACC 1964434
Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115
||| |||| ||||| ||||| | || || ||||| | | || | ||| ||
Sbjct 1964433 ATGGTCTCCCCGAAAATGGCGTTCTCTCTGGGCTTCTCGACCAGCAGACCCGGGTACAGC 1964374
Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| || || || |||| || || | | ||||| ||| || || || || || |||
Sbjct 1964373 TCCACGGCGTCCACGTGTCCGTACATCTCCTCCAAAATGGCTGCCATTTCTTTATCTCCT 1964314
Query 9176 ACAA 9179
||||
Sbjct 1964313 ACAA 1964310
Score = 89.7 bits (98), Expect = 7e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 9753 CTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCT 9812
||| || |||| | ||||| | | || || || || || || | ||||||||| |
Sbjct 1961622 CTCATCGTCCCAGTAAGGGTGGACCTCCTTTAGCACGTCACATACTCGGTTGTGTTCACG 1961563
Query 9813 CAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCAC 9872
||||| ||||| ||||||||||| | ||| || || | ||||| |||||| ||||||
Sbjct 1961562 AAGCCAGATGGTAGCGTACATCATGAGACCAGGGACCAGGCCAAAAGCTTCATGCCCCAC 1961503
Query 9873 TGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTT 9932
|||||| | | | || || || | ||| | ||| |||| | ||| | ||| ||
Sbjct 1961502 TGCAAACCTCTGGGACTCTGGGACATGGGGAGGATAGTGCATGTCCACACCGACCTCCTT 1961443
Query 9933 GACGGTGGGGGGATACATTTCACC 9956
|| || ||||| ||||| || ||
Sbjct 1961442 CACTGTCGGGGGGTACATCTCTCC 1961419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723577645508000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |