Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq9898 87.8 3e-12 seq11714 86.0 1e-11 >seq9898 Length=4754808 Score = 87.8 bits (96), Expect = 3e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| || || | ||||||| | || ||||| ||| || || || || | Sbjct 101668 CCTGCTTCCAGCCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATAT 101609 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 |||| || ||||||||||| ||||| ||| |||| || || ||||| ||||| |||| Sbjct 101608 GAATATTTAGAGACTGGCTCTGGTCAATG-TAGGCACCGCGGTCTGCAGCCATCTTGAGT 101550 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 || |||||||| || || ||||| || || || Sbjct 101549 ATAGTCTTCTGTGATATTTCCCAAACTGTTTT 101518 >seq11714 Length=3826745 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || |||||| || | ||||||| | ||||||| ||| || || || |||||||| Sbjct 1500382 CTTCCACCCATAGAAGTGCATGCTTGTGAGTTTGCCATAGTTTGGTTCAGCAATGTGAAT 1500441 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 ||||||||| ||||| ||||| ||| |||| || || || || ||||| |||| | Sbjct 1500442 GTTCAGAGATTGGCTCTGGTCAATG-TAGGCACCACGGTCAGCCGCCATCTTGAGGACCA 1500500 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | ||||| || || |||||||| || ||| Sbjct 1500501 TTTTCTGAGAGATTTCCCACACAGTTTTG 1500529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794990006507200