Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq10290 140 3e-28
seq9943 120 3e-22
seq11085 96.9 3e-15
seq14790 93.3 4e-14
seq11381 91.5 1e-13
>seq10290
Length=4455921
Score = 140 bits (154), Expect = 3e-28
Identities = 171/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || || || ||||| ||||| ||||||||||||||| | || || ||| ||
Sbjct 2170706 AATATGCAGATCTTTGTGAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTGGAGCCC 2170765
Query 38301 ACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
| ||||| | || ||| | |||| | || || | ||||| || || |||||| | ||
Sbjct 2170766 AGCGACACGATTGAAAATG-TTAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGA 2170824
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
|| ||| || | || | || ||||| ||||| || || | ||||||||| |||||
Sbjct 2170825 TCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGACTA 2170884
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||||| || ||| | || || ||| | || |||||| ||||||| ||
Sbjct 2170885 CAACATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2170935
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || ||||| |||||||| || ||| | || || ||| |||
Sbjct 2172856 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACTATTACCCTTGAGGTTGAGCCCAGT 2172915
Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | ||||| | |||| || || | ||||| || || |||||| | || ||
Sbjct 2172916 GACACCATTGAAAACG-TGAAAGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCA 2172974
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| |||| |||| || ||||| ||||| || || | ||| |||||| |||||||||
Sbjct 2172975 ACAAAGGCTTATTTTTGCTGGCAAGCAGCTTGAGGATGGGCGTACCCTCTCCGACTACAA 2173034
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| || ||| | || || || || || ||||| | ||||| ||
Sbjct 2173035 CATCCAGAAAGAATCCACTCTTCACTTAGTCCTGCGCCTCAGAGGTGG 2173082
Score = 129 bits (142), Expect = 6e-25
Identities = 168/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| ||||| || || |||||||| | || || ||| |||
Sbjct 2171165 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 2171224
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| || || |||||| | || ||
Sbjct 2171225 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 2171283
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || | || | || ||||| ||||| || || | |||||||||| |||||||||
Sbjct 2171284 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGATGGGCGCACCCTCTCCGACTACAA 2171343
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
||||||||||| | || || ||| | || |||||| |||| || ||||
Sbjct 2171344 TATCCAAAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGCC 2171393
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| ||||| || || |||||||| | || || ||| ||| |
Sbjct 2170937 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTTTGGAGGTGGAGCCCAGC 2170996
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || || | ||||| || || |||||| | || ||
Sbjct 2170997 GACACCATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 2171056
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| |||| |||| || ||||| ||||| || |||| ||||| || |||||||||
Sbjct 2171057 CAGAGGCTGATTTTTGCCGGCAAGCAGCTCGAAGACGGCCGCACTCTGTCTGACTACAAC 2171116
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || || ||| | || || ||| | || |||||| ||||||| ||
Sbjct 2171117 ATTCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2171163
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| ||||| || || |||||||| | || || ||| |||
Sbjct 2173084 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 2173143
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| || || |||||| | || ||
Sbjct 2173144 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 2173202
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || | || | || || || ||||| || |||| || || || ||||||||
Sbjct 2173203 GCAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGTACTCTGTCTGACTACAA 2173262
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|||||| || ||| | || || ||| | || || ||| | || || ||||
Sbjct 2173263 CATCCAGAAAGAATCCACCCTTCATCTTGTTCTTCGTCTCAGGGGTGGCC 2173312
>seq9943
Length=499256
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976
||||||| ||| |||||||||||| ||| |||| |||||||| ||||| ||||| |
Sbjct 292078 CCTCGTCTCTGCTGATGAGTTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 292019
Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036
||||||| || ||||||||||| || || ||||||| |||||||| || ||||| |
Sbjct 292018 TGAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATCCCCTCGACAGCGGCGAACG 291959
Query 133037 CCACCAGGCGCTCGCC 133052
|||||| ||||| ||
Sbjct 291958 CCACCACACGCTCCCC 291943
Score = 93.3 bits (102), Expect = 4e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338
||||| || ||||||||||| |||||||||||||||||||| |||| ||||| |||
Sbjct 290929 ACCAGGTTCTCGTTGACGATTCCGTCGCTGGCGGCGAAAAAAGCCAAAACGTGAGAAATG 290870
Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398
|| | ||| | ||| |||| |||||||| || ||| |||||||||||||||
Sbjct 290869 AAGAACCTCTCCTCGTCCTTCAGAGTCTCCCAGTGCTGCAGGTCTTTGGACAGGTCCACC 290810
Query 133399 T 133399
|
Sbjct 290809 T 290809
>seq11085
Length=328877
Score = 96.9 bits (106), Expect = 3e-15
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 38320 TTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379
|||| | ||| |||| | |||||| | ||||| | ||||| ||| | || |||| |
Sbjct 147918 TTAAGGCAAAGATCCAGGGCAAAGAAGATATTCCTCCTGACCAGCAGAGACTGATTTTTG 147977
Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439
| || || ||||| || |||| | |||||| ||||||||||| || |||||| | |
Sbjct 147978 CTGGTAAGCAGCTTGAAGACGGTCATACCCTCTCAGACTACAACATGCAGAAGGAATCCA 148037
Query 38440 CGCTGCATTTGGTGCTGCGTTTGAGAGG 38467
| || ||||||||||| ||||||||||
Sbjct 148038 CCCTCCATTTGGTGCTATGTTTGAGAGG 148065
>seq14790
Length=565
Score = 93.3 bits (102), Expect = 4e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338
||||| || ||||||||||| |||||||||||||||||||| |||| ||||| |||
Sbjct 513 ACCAGGTTCTCGTTGACGATTCCGTCGCTGGCGGCGAAAAAAGCCAAAACGTGAGAAATG 454
Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398
|| | ||| | ||| |||| |||||||| || ||| |||||||||||||||
Sbjct 453 AAGAACCTCTCCTCGTCCTTCAGAGTCTCCCAGTGCTGCAGGTCTTTGGACAGGTCCACC 394
Query 133399 T 133399
|
Sbjct 393 T 393
>seq11381
Length=12543884
Score = 91.5 bits (100), Expect = 1e-13
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 133394 CCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCG 133453
|||||||||| || ||||| || || |||| || | |||||||| |||| ||||| |
Sbjct 9285226 CCACCTCCTCCACTGTCCAGAAGGATGCCTGTGCCTGCTTGTACATTTTCCAGATGTCAG 9285167
Query 133454 AATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508
|| |||||||| ||||||||||||| | ||||||||| | | ||| |||||
Sbjct 9285166 GGTAATGTATGGGGAAAATCACAAACCTTCTGGGGTTTTCTTGAAGCAGTGGCTC 9285112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500068889100800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |