Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq10289 172 2e-37 seq10290 95.1 5e-14 seq8916 91.5 6e-13 >seq10289 Length=12717785 Score = 172 bits (190), Expect = 2e-37 Identities = 287/414 (69%), Gaps = 3/414 (1%) Strand=Plus/Plus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | | ||||| | || |||||||| || || | || ||| |||||| Sbjct 4422894 GGCAAGCCCAAAGTACAAGTGGAGTACAAAGGTGAGACAAAGGCGTTCTATCCAGAAGAA 4422953 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || || |||||| | ||| ||||| |||| ||||| ||| | || | Sbjct 4422954 ATCTCGTCAATGGTTTTGGTTAAGATGAAGGAAATTGCAGAGGCGTATTTGGGGCAAAGA 4423013 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || | ||||||| || || || || |||||||||||||| | || || ||||| || Sbjct 4423014 GTGTCCAATGCAGTCATCACAGTCCCTGCTTATTTCAATGACTCCCAGCGCCAAGCCACA 4423073 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||||||| |||| ||||||| ||||| || |||| || |||||||| || ||| Sbjct 4423074 AAAGATGCAGGAGTTATTTCTGGTTTGAATGTCCTGAGAATCATCAATGAACCAACTGCA 4423133 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 || ||| | |||||||| |||| || || ||| || || |||| || | | Sbjct 4423134 GCAGCTATTGCATATGGTCTAGACAAGGGAA---AAAGAGGGGAGCGAAATGTTCTCATC 4423190 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 |||||| | ||||| || ||| ||| || | || ||||||||||||| | ||| Sbjct 4423191 TTTGATCTGGGTGGTGGCACTTTTGACGTATCCATTCTGACAATTGAAGATGGCATTTTT 4423250 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 || || || || || ||| || || || | || || ||||| |||| ||| Sbjct 4423251 GAGGTGAAAGCCACAGCTGGAGACACACACTTGGGTGGAGAAGACTTTGACAAT 4423304 >seq10290 Length=4455921 Score = 95.1 bits (104), Expect = 5e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | || || || || || || || || ||||||||||| ||||| ||||| | Sbjct 2172853 ATCATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACTATTACCCTTGAGGTTGAGCCC 2172912 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 ||| | ||||||| | ||| || ||||| || |||||||| ||||| || ||| Sbjct 2172913 AGTGACACCATTGAAAACGTGAAAGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGAT 2172972 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 |||||| | | ||||| | || || || ||||| ||||| | || | | || || Sbjct 2172973 CAACAAAGGCTTATTTTTGCTGGCAAGCAGCTTGAGGATGGGCGTACCCTCTCCGACTAC 2173032 Query 391227 AATATTGATAAGGATGCAACACTTCACTTAGT 391258 || || | || || | || ||||||||||| Sbjct 2173033 AACATCCAGAAAGAATCCACTCTTCACTTAGT 2173064 >seq8916 Length=5461894 Score = 91.5 bits (100), Expect = 6e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 451474 AGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTC 451533 ||| || |||||| | || |||||||| ||||| || || ||| ||| | || | Sbjct 3649267 AGAGAAGAATATTCTTGTGTTTGATTTGGGTGGTGGCACATTTGACGTCTCTCTTCTGAC 3649208 Query 451534 AATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGA 451593 ||||| |||| ||||||||||| ||||||||||| ||||| ||||||||||| || Sbjct 3649207 CATTGACAATGGTGTATTTGAAGTGGTCGCAACCAATGGGGATACCCATCTAGGAGGAGA 3649148 Query 451594 AGATATTGAT 451603 |||| | ||| Sbjct 3649147 AGATTTCGAT 3649138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975297683114960