Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq10289 351 7e-91 seq11382 123 2e-22 seq13501 98.7 8e-15 >seq10289 Length=12717785 Score = 351 bits (388), Expect = 7e-91 Identities = 960/1459 (66%), Gaps = 16/1459 (1%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| |||||| ||||| ||||| || || | |||||||| || ||||| || ||||| Sbjct 4424068 GCAGACACATTGAGAATGCCATTAGCGTCGATGTCAAATGTTACCTCAATCTGTGGGACT 4424009 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 ||||| | || |||||||||||| || | ||| | || || ||||| |||||| Sbjct 4424008 CCTCTTGGGGCTGGTGGGATCCCTGTCAGGTCAAACTTGCCAAGGAGGTTATTGTCTTTA 4423949 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | | |||||| || || | ||||| ||| | | |||||||| || || Sbjct 4423948 GTCATGGCCCTTTCACCTTCAAAGACCTGGATGAGCACTCCCGGCTGATTATCGGAGTAC 4423889 Query 517439 GTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 || | || | ||||| ||| ||| || ||||| ||||| | | || | ||| Sbjct 4423888 GTGGAGAAGA-TCTGGGTTTGTTTGGTGGGGATTGTGGTGTTACGTTTGATCAGTGCGGT 4423830 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||| | ||||||||||| || | || | ||| || |||| ||||||| || | | Sbjct 4423829 CATTACTCCACCTGCTGTCTCAATGCCCAAAGACAGTGGAGCAACATCAAGCAGAAGGAG 4423770 Query 517558 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 517617 | || | || ||| || | || | || ||||| || || | ||||| ||||| Sbjct 4423769 GTCCTGGACATTCTCAGAGGTGTCCCCCATCAGGATAGCAGCCTGGACCGCAGCTCCATA 4423710 Query 517618 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGA 517677 || || |||||||| || || | ||| || | | | ||||| || || | Sbjct 4423709 GGCCACGGCTTCATCCGGGTTGATGCTTTTGTTCAAGTCCCTTCCATTAAAGAAGTCCTG 4423650 Query 517678 AAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC 517737 || |||| | | || ||||| | | ||||| || || | ||||| || | | Sbjct 4423649 CAGCAGTTTTTGGATTTTGGGAATTCTTGTGGATCCGCCCACCAGGACAATGTCGTTGAT 4423590 Query 517738 CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCT 517797 || ||||| ||||| || | ||| |||| |||| ||||| || || || | || Sbjct 4423589 CTTGGATTTGTCCAGCTTGGCATCTTGTAAAGCTTTCTCAACAGGGTCTAGTGTGCCCCT 4423530 Query 517798 AAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCA 517855 || | |||||| |||||||| ||| |||| ||| || ||| | || || ||| Sbjct 4423529 GAAGAGGTCTGAGTTTAGTTCTTCAAATCGGGCTCGAGT--GATTGAGGTGTAAAAGTCA 4423472 Query 517856 ATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGT 517915 ||||| || | | ||| |||| ||| || | | ||| || || ||||| | | Sbjct 4423471 ATTCCCTCATATAGAGAGTCAATTTCGATGCTTGCTTGGGTGCTGGATGATAGAGTCCTC 4423412 Query 517916 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT--TGCTGATTGATTCAAAT 517973 || || |||||||| ||||| | || || | | ||| | || | ||| | | | Sbjct 4423411 TTGGCGCGTTCACAAGCTGTACGCAGCCTCCTCACCGCTCTCTTGTT--TTGGCTGATGT 4423354 Query 517974 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 518033 || |||| | |||||||| || || |||||| | | || | ||||| ||||| | Sbjct 4423353 CTTTTTTGTGCTTTCTCTTAAACTCATCAACAAAGTGCTTCACCATGCGATTGTCAAAGT 4423294 Query 518034 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 518093 |||| || ||||| | || | ||| | || ||| | || | |||| |||||||||| Sbjct 4423293 CTTCTCCACCCAAGTGTGTGTCTCCAGCTGTGGCTTTCACCTCAAAAATGCCATCTTCAA 4423234 Query 518094 GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 518153 | || || | ||| ||| || |||||||||| |||||| || || ||||| | Sbjct 4423233 TTGTCAGAATGGATACGTCAAAAGTGCCACCACCCAGATCAAAGATGAGAACATTTCGCT 4423174 Query 518154 CTTTGTCTTGGTTT---TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 518210 | |||| ||| || || |||||||| |||| ||| || |||||||||||||| | Sbjct 4423173 CCCC-TCTT--TTTCCCTTGTCTAGACCATATGCAATAGCTGCTGCAGTTGGTTCATTGA 4423117 Query 518211 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 518270 | ||||||| ||||| | ||||| ||| |||||||||||| |||||||| | || | Sbjct 4423116 TGATTCTCAGGACATTCAAACCAGAAATAACTCCTGCATCTTTTGTGGCTTGGCGCTGGG 4423057 Query 518271 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAG 518330 | || || ||||| ||||| || || || || |||| | ||| || || | ||| | Sbjct 4423056 AGTCATTGAAATAAGCAGGGACTGTGATGACTGCATTGGACACTCTTTGCCCCAAATACG 4422997 Query 518331 CGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATT 518390 | ||| ||| ||||| ||| |||| |||||| || |||| |||||| | | Sbjct 4422996 CCTCTGCAATTTCCTTCATCTTAACCAAAACCATTGACGAGATTTCTTCTGGATAGAACG 4422937 Query 518391 GCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTT 518450 ||| | ||| || || |||| | | || || || || | || |||| Sbjct 4422936 CCTTTGTCTCACCTTTGTACTCCACTTGTACTTTGGGCTTGCCACTGTCACTGATCACTT 4422877 Query 518451 TAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 518510 | || ||||| ||||| || | || ||| | |||||| ||| | ||| || || | Sbjct 4422876 TGAAAGGCCAAAGCTTCATGTCAGCCTGCACAATAGGGTCATCAAATTTTCTCCCGATGA 4422817 Query 518511 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCAT 518570 || || |||||||| || || || | || || || || | || | ||| || || | Sbjct 4422816 GTCTCTTGGCATCAAAGATGGTGTTAGCCGGGTTCATGGCCACCTGGTTTTTAGCAGCGT 4422757 Query 518571 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 518630 | ||||| || || || || || || | ||| || || || ||||| || || | Sbjct 4422756 CACCAATTAGCCTCTCGGTGTCAGTGAAGGCAACGTAACTGGGGGTGGTGCGGTTGCCCT 4422697 Query 518631 GATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTG 518690 | ||||| || || || || ||||| |||| || | || || || || | || | Sbjct 4422696 GGTCATTGGCGATGATCTCCACTTTGCCATGCTGGAAAACGCCCACGCAGGAGTAGGTGG 4422637 Query 518691 TTCCTAAATCAATACCAAT 518709 |||| | ||||| ||||| Sbjct 4422636 TTCCCAGGTCAATGCCAAT 4422618 Score = 87.8 bits (96), Expect = 1e-11 Identities = 109/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 322228 TTTTTCACTTC-CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAA 322286 |||||| ||| ||| ||| ||||||| ||||||||||||||||||||| || ||| | | Sbjct 4423167 TTTTTCCCTTGTCTAGACCATATGCAATAGCTGCTGCAGTTGGTTCATTGATGATTCTCA 4423108 Query 322287 GAACATCTAAACCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAA 322346 | |||| ||||| | ||| | | ||| || ||||| | ||| | |||||| | Sbjct 4423107 GGACATTCAAACCAGAAATAACTCCTGCATCTTTTGTGGCTTGGCGCTGGGAGTCATTGA 4423048 Query 322347 AATATGCTGGTACAGTAATAACTGCTTT 322374 |||| || || || || || ||||| || Sbjct 4423047 AATAAGCAGGGACTGTGATGACTGCATT 4423020 >seq11382 Length=3889881 Score = 123 bits (136), Expect = 2e-22 Identities = 894/1427 (63%), Gaps = 22/1427 (2%) Strand=Plus/Minus Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 ||| || || || || ||||| || | ||||| ||||| || |||||||||||||||| Sbjct 945769 CACGTTCAGGATGCCGTTGGCGTCGATGTCAAAAGTGACCTCGATTTGAGGGACCCCTCG 945710 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 517383 | ||||| |||||||| || | ||| ||||| || || ||||| || | Sbjct 945709 GGGGGCAGGGGGGATCCCCGTCAGCTCAAAGCGGCCCAGCAGGTTGTTGTCTTTGGTCAT 945650 Query 517384 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 517443 || || || ||| | | ||||| || | | || || || || || || | Sbjct 945649 AGCTCTCTCCCCTTCGTACACCTGGATCAGGACCCCGGGCTGGTTGTCGGAGTAGGTGCT 945590 Query 517444 AAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 517502 || ||||| | | || ||||| || ||||| | | || | ||||| | Sbjct 945589 GAAGG-TCTGGGTCTGCTTGGTGGGAATGGTGGTGTTGCGTTTGATCAGGGCCGTCATGA 945531 Query 517503 TACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTT 517562 || || ||||| || | || || || ||||||| || || | |||| | | | Sbjct 945530 CCCCTCCAGCTGTCTCGATGCCCAGGGACAGAGGAGCTACGTCCAGCAGGAGCAGGTCCT 945471 Query 517563 GAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 517622 | | || | ||| | || |||||||| ||||||| ||||| ||||| || | Sbjct 945470 GGACCTTCCCTGAAGTGTCCCCGGAGAGAATAGCAGCTTGAACGGCAGCCCCATAAGCCA 945411 Query 517623 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAA 517682 | || ||||| ||||||| | | || || | |||||||| || | || | Sbjct 945410 CCGCCTCATCTGGATTAATGCTCTTGTTCAGGTCGCGGCCATTGAAGAAGTCCTGCAGGA 945351 Query 517683 GTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 517741 ||| ||| || ||||| || | | || || || || | || | ||||| | |||| Sbjct 945350 GTT-TCTGGACTTTAGGGATCCTGGTGGAGCCCCCGACCAGGACCACATCATGGATCTGT 945292 Query 517742 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAAC 517801 ||| |||| ||| | || | |||| || || || || || |||| ||| Sbjct 945291 CCTTTGTCCATTTTGGCGTCTCTCAGGGCTTTCTCCACAGGCTCCAGCGTTCCTCTGAAC 945232 Query 517802 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTC 517859 | |||||| || || || || || ||||| || || || | || || || || Sbjct 945231 AGGTCTGAGCATAGCTCCTCAAAGCGTGCTCTGGT--GATGGAGGTGTAGAAGTCCTGTC 945174 Query 517860 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTG--AGTCGAAGAAGATAGTGCACGTTT 517917 | || || | ||| || | ||||| | | || || | || | | ||| | | || Sbjct 945173 CCTCAAATAGAGAGTCTATCTCAATGCTGGCCTGGGAGCTGGAGGACAGAGTCCTC--TT 945116 Query 517918 AGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT-TGATTCAAATCTG 517976 ||| | |||||| ||||| | ||||| | | |||| | || | || | | || Sbjct 945115 AGCCCTTTCACACGCTGTACGCAGTCTCCTCAGGGCTCTCT-TGTTCTGGCTAATGTCCT 945057 Query 517977 TTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 518036 | || | ||| |||||||| || || ||| | || || | || || ||||| || | Sbjct 945056 TCTTGTGTTTCCTCTTGAACTCCTCCACAAAGTGGGTGACCATGCGGTTGTCAAAGTCCT 944997 Query 518037 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 518096 | || |||| | || | ||| | ||| || | |||| || | || ||||| | | Sbjct 944996 CTCCACCCAGATGGGTGTCTCCAGCCGTGGCCTTGACTTCAAAGACACCGTCTTCGATGG 944937 Query 518097 ACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 518156 | | | || ||| ||| || || |||| ||||| || || || || ||| Sbjct 944936 TGAGGATGGACACGTCAAAGGTGCCCCCTCCCAGGTCAAAGATGAGGACGTTGCGCTCTC 944877 Query 518157 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 518216 || ||| || || || || || | ||| ||||| || || ||||| || |||| Sbjct 944876 CAGAACGGCCTTTGTCCAGGCCGTAGGCGATAGCGGCAGCCGTAGGCTCATTGATGATTC 944817 Query 518217 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 518276 ||| ||| || || || || || ||||| ||||||||||| ||||| || || |||| Sbjct 944816 TCAGAACGTTGAGTCCGGCGATCACACCTGCGTCTTTAGTGGCCTGTCTCTGGGAGTCGT 944757 Query 518277 TAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTG 518336 | || || || || || || || || || | | || | | || | || || || Sbjct 944756 TGAAGTAGGCTGGGACTGTGATCACTGCGTTGGACACCTTGTGGCCCAGGTAGGCCTCTG 944697 Query 518337 CCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGG--GAATATTGCTT 518394 || | ||||| || | || ||| || || |||| |||||| ||| | ||| Sbjct 944696 CCACCTCCTTCATCTTCACCAGAACCATGGAGGAGATTTCCTCTGGGCTGAAGGT--CTT 944639 Query 518395 GGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAA 518454 | ||| | || ||| | | |||||| || || | | || ||||| Sbjct 944638 GTCTTCTCCCTTGTACTCCACTCTGATCTTAGGTTTACCACTGTCACTCACCACCTTAAA 944579 Query 518455 TGGCCAGTATTTCATATCTGATTGAACACTTTG--GTCATTAAAATCTCTACCAATTAAT 518512 ||||||| ||||| || | || |||| || ||||| ||| | ||||| | Sbjct 944578 GGGCCAGTGCTTCATGTCGGCCTG--CACTGTGGAGTCATCAAACCTGCGGCCAATCAGC 944521 Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 | || |||||||| | || ||| | || || | || | || | ||||| |||||| Sbjct 944520 CTCTTGGCATCAAACACTGTGTTGTTGGGGTTCAGAGCCACCTGGTTCTTGGCAGCATCT 944461 Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 || || || | || || || || || | ||||| ||||| || | || || || Sbjct 944460 CCGATGAGGCGCTCAGTGTCGGTGAAAGCCACATAGCTGGGAGTGGTCCTGTTGCCCTGG 944401 Query 518633 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 ||||| || || ||||| ||||| || | ||| | || || ||||| Sbjct 944400 TCATTAGCGATGATTTCCACTTTTCCGTGTTGGAAGACCCCCACACA 944354 >seq13501 Length=12216461 Score = 98.7 bits (108), Expect = 8e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 517214 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 517273 ||||| || ||||| || || ||| ||| ||| || |||| | ||| |||||| Sbjct 9384794 TTAGTGATGGTAATCTTGTTTTCTTTCCCTGTGCTTTTGTCCACGGCTGACACGTTAAGA 9384735 Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 |||||||||||||| | ||||| || || ||||| || ||||| ||||| |||||||| Sbjct 9384734 ATACCATTGGCATCTATGTCAAAGGTCACCTCAATCTGGGGGACACCTCTTGGAGCAGGT 9384675 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 517380 ||||| || | | ||| ||||||| | || || |||||||| Sbjct 9384674 GGGATACCAGTGAGCTCAAACTTTCCCAGGATGTTGTTGTCTTTAGT 9384628 Score = 95.1 bits (104), Expect = 9e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| || || || ||||||||||| ||||| | || ||| Sbjct 9383619 TTTTTGTCCAAGCCATAGGCAATGGCTGCTGCCGTTGGTTCATTGATAATACGCAGCACA 9383560 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||||||| ||| |||||||| || || || | || || || || || || Sbjct 9383559 TTAAGCCCAGCAATAGCTCCAGCATCTTTGGTCGCCTGGCGCTGGGAGTCATTGAAGTAG 9383500 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| ||||| | ||| |||| Sbjct 9383499 GCAGGGACAGTTACAACTGCAT 9383478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779997660853720