Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq9898 208 9e-49 seq9943 98.7 1e-15 seq11381 86.0 8e-12 >seq9898 Length=4754808 Score = 208 bits (230), Expect = 9e-49 Identities = 936/1451 (65%), Gaps = 54/1451 (4%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| ||||| ||||| | || || | || ||||| ||||||||| | | Sbjct 99898 CCACAGCACATGCTCATGAGAGTAGCTGTTGGAATCCACAAAACTGATATTGATGCAGCC 99957 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || | |||| | || ||||| || || | || || || || Sbjct 99958 ATTGAGACCTACAACCTGCTGTCTGAGAAGTG-GTTCACTCATGCCTCTCCCACTCTGTT 100016 Query 111731 CAACGCTGGTACACCAA--GACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 ||| || || |||||| |||| || | || ||||| ||||| | || | ||||| Sbjct 100017 CAATGCAGG--CACCAACAGACCACAGCTCTCTAGTTGCTTCCTGCTGGCCATGAAGGAT 100074 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || || |||||||||| | || |||| |||| || | ||||| || | || Sbjct 100075 GACAGCATTGATGGCATTTATGATACACTCAAACAATGCGCTCTCATCTCCAAATCTGCA 100134 Query 111849 GGTGGTATCGGGAT-GCACATCCATGATGTCAGAGCCAACAAGTCTCGT-ATTAGAGGTA 111906 || || || || | ||| | || | ||| | |||| | | ||| || | Sbjct 100135 GGAGGGATTGGTGTAGCAGTTAGCTGCATT-AGATC-AACAGGAAGCTACATTGCTGGAA 100192 Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 |||||||| | ||| |||| || | |||||||| | || | ||| ||| ||||||| Sbjct 100193 CAAATGGTAATTCAAATGGCCTTGTGCCAATGCTGAGGGTGTACAACAACACGGCGCGCT 100252 Query 111967 ATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | || |||||| ||| | || || | | || | || ||||||||||||| Sbjct 100253 ACGTGGACCAAGGTGGCAATAAACGACCTGGTGCCTTTGCCATGTACCTTGAGCCATGGC 100312 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 || || | | || ||||||||||| ||| ||| | |||||| | || Sbjct 100313 ACTTTGACGTGTTTGACTTCCTTGAGTTAAAGAAGAACACTGGTAAAGAGGAGCAGAGGG 100372 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 || || ||||||| || || ||||| || ||| | ||||||||||| || || | | Sbjct 100373 CACGAGACCTCTTCTATGCCCTATGGATCCCTGATTTGTTCATGAAGAGGGTGGAAAACA 100432 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCC-AGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGG 112201 | |||||| | | || || || | || || || || || || | ||| Sbjct 100433 ACCAGGACTGGTCTTTGATGTGCCCCAGTGAGTGC-CCTGGGCTGGATGAGTGTTGGGGG 100491 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGT 112261 ||||||||||| || ||||| |||||| | ||| || || || |||| Sbjct 100492 -GAGGAGTTTGAGAAGCTGTACACTCGCTACGAGCAGGAA----GGCAGAGTGAAACGGG 100546 Query 112262 --GCCA--GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 | || ||| | |||||| | || || | ||||||| || || || || || | Sbjct 100547 TGGTCAAGGCTCAGCAGGTGTGGTATGCCATCATAGAGTCTCAGACTGAAACAGGAACTC 100606 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | || ||| | |||||||| ||||||||| ||||||||||| |||||||||| | Sbjct 100607 CTTACATGTTGTACAAAGATGCCTGTAACAGGAAGAGTAATCAGCAGAATTTGGGCACTA 100666 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 |||| | ||| | || || || || |||| | |||| |||||||||| || | Sbjct 100667 TCAAATGCAGTAACTTGTGCACTGAGATTGTGGAGTATACAAGCAAAGATGAGGTAGCCG 100726 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 112497 | |||||| | || || || ||||| || |||||| |||||| | ||| |||| Sbjct 100727 TCTGTAACTTGGCTTCTATTGCTCTTAACATGTATGTTACTCCAGA---ACGGACCTTTG 100783 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAA---ACTGTCACAAAAAACCTAAACAGAGTTA 112554 | | |||| || | || || ||| | ||| || |||||| |||| | | Sbjct 100784 ACTTCAAAAAGCTTGCCTCTGTCACTAAAGTAATTGT---AAGAAACCTCAACAAGATCA 100840 Query 112555 TTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 |||| | || | ||||| || ||| | | || || || | | | ||| | | Sbjct 100841 TTGACATTAACTACTACCCAGTCCCTGAAGCCGAG---AACTCGAACAAGCGCCACAGGC 100897 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTG 112671 |||| || | || || || |||||||| |||| |||||||| || | |||||| Sbjct 100898 CAATCGGAATTGGAGTGCAGGGTCTCGCAGATGCCTTCATTCTCATGCGTTATCCATTTG 100957 Query 112672 AT--TCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGC 112729 | ||| ||||| || | || | || ||||||||||| || ||||||| Sbjct 100958 AAAGTCCT--GAAGCCCAGCTGCTGAACATCCAGATCTTTGAGACAATATACTACGCCGC 101015 Query 112730 TCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 112789 || ||||| || | ||||| ||||| || || || ||||| || | ||||| Sbjct 101016 CCTGGAGGCAAGCTGCGAGTTAGCAGAAAAAGACGGGCCTTATGAGACATACCCAGGTTC 101075 Query 112790 TCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGG--GAAGGTG-AGACCAAGCTTC 112845 ||||| | ||||| | || |||| || |||||| ||||||| ||| ||| Sbjct 101076 TCCAG-TGAGTAAGGGCATTCTGCAATACGACATGTGGGAGAAGGTGCCGACTGCGCT-- 101132 Query 112846 ACTACGACTGGGACGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 112904 || |||| ||| ||| || ||||| || | | | ||| | | ||||| || Sbjct 101133 -CTGGGACT-GGAAGCTGCTTAAGGAGAAGATTACTAAACATGGTGTGAGGAACAGCCTG 101190 Query 112905 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 112964 ||| |||| || ||||| || || ||||| |||||||| | || || ||||| | | | Sbjct 101191 TTGTTGGCCCCCATGCCTACTGCTTCCACAGCACAAATACTAGGCAACAATGAGTCCATC 101250 Query 112965 GAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 113024 ||| ||||||| | |||||||| | ||| |||| | ||||||||| |||||| Sbjct 101251 GAAGCCTACACCAGCAACATCTACACACGCAGAGTCCTCTCCGGAGAGTTTCAGATTGTA 101310 Query 113025 AACAAGCATCT 113035 ||| ||||| Sbjct 101311 AACCCACATCT 101321 >seq9943 Length=499256 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 102203 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 102262 ||| ||||| |||||||||||||| |||||| ||| |||| ||||||||||| ||||| Sbjct 291969 TGTCGAGGGGATCTTCTTCTCTGGATCCTTCGCCGCCATTTTCTGGCTCAAGAAACGAGG 292028 Query 102263 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 102316 || ||||| || || |||||||||||| || ||| | ||||||| ||| Sbjct 292029 CCTGATGCCCGGACTGACCTTCTCCAACGAACTCATCAGCAGAGACGAGGTACT 292082 >seq11381 Length=12543884 Score = 86.0 bits (94), Expect = 8e-12 Identities = 88/110 (80%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCT 102250 |||||||| ||| ||||| || ||||||||||| ||||| ||| || ||||||||||| Sbjct 9286870 GCATTTGCAGCTGTAGAGGGAATTTTCTTCTCTGGATCCTT-TGCGGCCATTTATTGGCT 9286928 Query 102251 CAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT-CTCCAACGAGCTTATC 102299 || ||| | ||||| ||||| ||||| | ||| ||||| || |||||| Sbjct 9286929 GAAAAAGAGGGGTCTAATGCCCGGTCT-TACTTATTCCAATGAACTTATC 9286977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620613440766400