Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq11714 98.7 1e-15 seq11381 82.4 9e-11 >seq11714 Length=3826745 Score = 98.7 bits (108), Expect = 1e-15 Identities = 109/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTC---TTAATCGTCCCCAAATTCTT 106560 |||||| |||| ||| || || |||| ||| ||| || || || || ||||||| Sbjct 1502033 TGTGTATTCTACAATCTCAGTGCACAGGTT---ACTGGATTTGATGGTGCCTAAATTCTG 1502089 Query 106561 TTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGT 106620 ||||||||||| | || || ||||| |||||||||||||| || ||||| ||||| || Sbjct 1502090 CTGGTTACTCTTCCTATTACATGCATCTTTGTAGAGCATGTACGGTGTCCCTGTCTCTGT 1502149 Query 106621 CTGTGACTTGAGAATTGCCTTCCA 106644 |||||||| | ||| || | ||| Sbjct 1502150 CTGTGACTCAATAATGGCATACCA 1502173 >seq11381 Length=12543884 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/123 (77%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTG-AGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||||||| | ||||||||||| | | ||| | || || ||||| ||||||| ||| Sbjct 9286990 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTA-AGACCGGGCATTAGACCCCTCTTT 9286932 Query 117352 TTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 117410 |||| ||||||||| | |||| || || || |||||||| || ||||| ||| ||||| Sbjct 9286931 TTCAGCCAATAAATGGCCGCA-AAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAA 9286873 Query 117411 CGC 117413 || Sbjct 9286872 TGC 9286870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589858231488800