Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq10290 118 7e-22
>seq10290
Length=4455921
Score = 118 bits (130), Expect = 7e-22
Identities = 143/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||||||||| ||||| ||||| || ||| | || |||| || ||||| || ||||||||
Sbjct 2170900 TTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAA 2170841
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| | | ||||| ||| | || | || |||||||| |||||| || ||
Sbjct 2170840 GATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTAACATT 2170781
Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| | |||| || | || ||| || || | ||| |||||||| || ||||| || |||||
Sbjct 2170780 TTCAATCGTGTCGCTGGGCTCCACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTCAC 2170721
Query 34970 AAAGATCTGCATATT 34984
|||||||||||||||
Sbjct 2170720 AAAGATCTGCATATT 2170706
Score = 98.7 bits (108), Expect = 6e-16
Identities = 140/195 (72%), Gaps = 4/195 (2%)
Strand=Plus/Minus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||||||||||||||| ||||| || || | || | || || ||||| || ||||||||
Sbjct 2171128 TTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAA 2171069
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| || | ||||| ||| | || | || |||||||| |||||| || || |
Sbjct 2171068 AATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTCAC--A 2171011
Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967
| || || | || | || ||| || || | || ||||| || || ||||| || |||
Sbjct 2171010 TTCTCAATGGTGTCGCTGGGCTCCACCTCCAAAGTGATGGTCTTCCCAGTGAGGGTTTTC 2170951
Query 34968 ACAAAGATCTGCATA 34982
|||||||||||||||
Sbjct 2170950 ACAAAGATCTGCATA 2170936
Score = 95.1 bits (104), Expect = 8e-15
Identities = 147/209 (70%), Gaps = 1/209 (0%)
Strand=Plus/Minus
Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833
|||| |||| ||| ||||||||| ||||| ||||| || || | || | || || |
Sbjct 2173291 CAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGAGTACGGCCGTCTTCGA 2173232
Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893
|||| ||||| ||||| || | | ||||| ||| | || | || |||||||| |
Sbjct 2173231 GCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGA 2173172
Query 34894 TCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953
|||| || ||| | || | |||| || ||| || || | || ||||| || |
Sbjct 2173171 TCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCC 2173112
Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCATA 34982
| ||||| || ||||||||||||||||||
Sbjct 2173111 CAGTGAGGGTTTTCACAAAGATCTGCATA 2173083
Score = 86.0 bits (94), Expect = 4e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| || || || || ||||| || ||| | || |||| || ||||| || ||||||||
Sbjct 2171355 TCCTTTTGGATATTGTAGTCGGAGAGGGTGCGCCCATCTTCAAGCTGCTTGCCGGCAAAG 2171296
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | | ||||| ||| | || | || |||||||| ||||| || |||
Sbjct 2171295 ATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTC 2171236
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | |||| || ||| || || | || ||||| || || ||||| || ||||||
Sbjct 2171235 TCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACA 2171176
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 2171175 AAGATCTGCATA 2171164
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324567843435360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |