Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq10290 118 7e-22 >seq10290 Length=4455921 Score = 118 bits (130), Expect = 7e-22 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| || ||||| || |||||||| Sbjct 2170900 TTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAA 2170841 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | ||||| ||| | || | || |||||||| |||||| || || Sbjct 2170840 GATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTAACATT 2170781 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | |||| || | || ||| || || | ||| |||||||| || ||||| || ||||| Sbjct 2170780 TTCAATCGTGTCGCTGGGCTCCACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTCAC 2170721 Query 34970 AAAGATCTGCATATT 34984 ||||||||||||||| Sbjct 2170720 AAAGATCTGCATATT 2170706 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||||||||| ||||| || || | || | || || ||||| || |||||||| Sbjct 2171128 TTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAA 2171069 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| ||| | || | || |||||||| |||||| || || | Sbjct 2171068 AATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTCAC--A 2171011 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || | || ||| || || | || ||||| || || ||||| || ||| Sbjct 2171010 TTCTCAATGGTGTCGCTGGGCTCCACCTCCAAAGTGATGGTCTTCCCAGTGAGGGTTTTC 2170951 Query 34968 ACAAAGATCTGCATA 34982 ||||||||||||||| Sbjct 2170950 ACAAAGATCTGCATA 2170936 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 |||| |||| ||| ||||||||| ||||| ||||| || || | || | || || | Sbjct 2173291 CAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGAGTACGGCCGTCTTCGA 2173232 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 |||| ||||| ||||| || | | ||||| ||| | || | || |||||||| | Sbjct 2173231 GCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGA 2173172 Query 34894 TCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 |||| || ||| | || | |||| || ||| || || | || ||||| || | Sbjct 2173171 TCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCC 2173112 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || |||||||||||||||||| Sbjct 2173111 CAGTGAGGGTTTTCACAAAGATCTGCATA 2173083 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || || || ||||| || ||| | || |||| || ||||| || |||||||| Sbjct 2171355 TCCTTTTGGATATTGTAGTCGGAGAGGGTGCGCCCATCTTCAAGCTGCTTGCCGGCAAAG 2171296 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||| ||| | || | || |||||||| ||||| || ||| Sbjct 2171295 ATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTC 2171236 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | || ||||| || || ||||| || |||||| Sbjct 2171235 TCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACA 2171176 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 2171175 AAGATCTGCATA 2171164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324567843435360