Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9898 383 2e-101 seq11714 86.0 7e-12 >seq9898 Length=4754808 Score = 383 bits (424), Expect = 2e-101 Identities = 999/1529 (65%), Gaps = 35/1529 (2%) Strand=Plus/Minus Query 47310 AGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTT 47369 ||||| || || ||||| ||||| ||||| || || ||||| || | || || || || Sbjct 101321 AGATGTGGGTTTACAATCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTGCTG 101262 Query 47370 GTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATG 47429 || || | ||| || || ||||| || || | ||||| || || || || ||||||||| Sbjct 101261 GTGTAGGCTTCGATGGACTCATTGTTGCCTAGTATTTGTGCTGTGGAAGCAGTAGGCATG 101202 Query 47430 GATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTC 47489 | || | || | ||| || || || |||| ||| |||| | ||| Sbjct 101201 GGGGCCAACAACAGGCTGTTCCTCACACCATGTTTAGTAATCTTCTCCTTAAGCAGCTTC 101142 Query 47490 CAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTT 47549 || ||||| || | | || || | ||| | || ||||| ||||| || ||||| Sbjct 101141 CAGTCCCAGAGCGCAGTCGGCACCTTCTCCCACATGTCGTATTGCAGAATGCCCTTACTC 101082 Query 47550 ATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCT 47609 | |||||||| ||||| | |||||| |||| | || || | || || ||||| Sbjct 101081 ACTGGAGAACCTGGGTATGTCTCATAAGGCCCGTCTTTTTCTGCTAACTCGCAGCTTGCC 101022 Query 47610 TCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGAT 47669 |||| || || |||||||| ||||| || | ||||| || | ||||| | Sbjct 101021 TCCAGGGCGGCGTAGTATATTGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCTTCAGGA 100962 Query 47670 GATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCA 47729 |||||| ||||| || | |||||| | || || || ||||| || Sbjct 100961 CTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACTCCAATTCCG 100902 Query 47730 ATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCT 47789 ||||| || || || || || ||| ||||| || | ||| || | ||| || || Sbjct 100901 ATTGGCCTGTGGCGCTTGTTCGAGTTCTCGGCTTCAGGGACTGGGTAGTAGTTAATGTCA 100842 Query 47790 ATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAAT------------ 47837 || || || || || |||||| || ||| | Sbjct 100841 ATGATCTTGTTGAG------------GTTTCTTACAATTACT-TTAGTGACAGAGGCAAG 100795 Query 47838 -TTATTAAAATCAAACTT--GTTATTTA-TAACAAACCTATTAAGTGCTATAGATGCTAG 47893 || || || ||||| | ||| | | ||||| || | ||||| || ||||| || | Sbjct 100794 CTTTTTGAAGTCAAAGGTCCGTTCTGGAGTAACATACATGTTAAGAGCAATAGAAGCCAA 100735 Query 47894 ATTACATACAGCTACCTCAT-TTGGATTAGTATATTGTATTATTTCAGCACATAGATTAC 47952 ||||| || |||||||||| || | || ||||| | | || |||| || | |||| Sbjct 100734 GTTACAGACGGCTACCTCATCTTTGCTT-GTATACTCCACAATCTCAGTGCACAAGTTAC 100676 Query 47953 CACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAA 48012 ||||||||||| |||||||| || |||||| | ||||||| || || ||||| | Sbjct 100675 TGCATTTGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCATCTTTGTACA 100616 Query 48013 GCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAG 48072 ||| |||| ||||| ||||| ||||||| || ||||| | | ||| || | || Sbjct 100615 ACATGTAAGGAGTTCCTGTTTCAGTCTGAGACTCTATGATGGCATACCACACCTGCTGAG 100556 Query 48073 CCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATT 48132 |||| | || | | || | || || ||||| ||| || | ||||||||| | Sbjct 100555 CCTTGACCACCCGTTTCACTCTGCCTTCCTGCTCGTAGCGAGTGTACAGCTTCTCAAACT 100496 Query 48133 CATCCCCATACACATT-ATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCC 48191 | ||||| | ||| | ||| | |||||| || ||| | || |||||||| ||||| ||| Sbjct 100495 CCTCCCCCCA-ACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCC 100437 Query 48192 TCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATC 48250 | | |||| || || |||| || | ||| || ||||| || || ||| || | || Sbjct 100436 TGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGC-ATAGAAGAGGTC 100378 Query 48251 CCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATC 48310 | | || | || || || ||| | ||| | || | ||||| ||||| | | || Sbjct 100377 TCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTTAACTCAAGGAAGTCAAACACGTC 100318 Query 48311 AGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATC 48370 | |||||||| || | || || || | |||| ||||||||||| || ||||| || Sbjct 100317 AAAGTGCCATGGCTCAAGGTACATGGCAAAGGCACCAGGTCGTTTATTGCCACCTTGGTC 100258 Query 48371 TATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACC 48430 | || | || || ||||| || || || | |||||| |||| |||||||| |||| Sbjct 100257 CACGTAGCGCGCCGTGTTGTTGTACACCCTCAGCATTGGCACAAGGCCATTTGAATTACC 100198 Query 48431 ATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACC 48490 ||| ||||| | ||| || ||||| | | ||| || |||| || | ||| || || Sbjct 100197 ATTTGTTCCAGCAATGTAGCTTCCTGTTGATCTAATGCAGCTAACTGCTACACCAATCCC 100138 Query 48491 ACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACT 48550 ||||| ||| || || ||||| || |||| || ||||||||||| || || || || Sbjct 100137 TCCTGCAGATTTGGAGATGAGAGCGCATTGTTTGAGTGTATCATAAATGCCATCAATGCT 100078 Query 48551 ATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATT 48610 ||||| |||| | || || |||||||| | || || || |||| ||| Sbjct 100077 GTCATCCTTCATGGCCAGCAGGAAGCAACTAGAGAGCTGTGGTCTGTTGGTGCCTGCATT 100018 Query 48611 AAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAAT 48670 || | || ||||| |||||| | ||||| ||||| || | || || || || ||||| Sbjct 100017 GAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAAT 99958 Query 48671 AACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGG 48730 | | ||| ||||| || || || || | || ||| | ||| | ||| | || || Sbjct 99957 GGCTGCATCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAGCATGTGCTGTGG 99898 Query 48731 TCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACC 48790 | ||| | | ||| ||| ||||||| || || || || | || ||||| || Sbjct 99897 ACGCTCAGCCACCTTGCCATTGATTTTCAGCAGGTAGGAGCGCTCTAGGGTCTTAAAGCC 99838 Query 48791 AAAATAGTTGTATGAAAAGTCGTTATCAT 48819 ||| | || || ||||| || |||||| Sbjct 99837 AAAGAAATTATAAGAAAAATCCCTATCAT 99809 Score = 105 bits (116), Expect = 8e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| ||||| || ||||| || || ||||| ||| | || |||| ||||||||||| Sbjct 101662 TCCAGCCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 101603 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||||| || ||||| ||||| | ||||| | || || ||||| | | ||| | Sbjct 101602 TTAGAGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTGAGTATAGTCT 101543 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220 | |||| ||| ||||| ||||||||||| | ||||| | || ||||||| Sbjct 101542 TCTGTGATATTTCCCAAACTGTTTTATACAGCTGTTTTAAATCATCTGGGA 101492 >seq11714 Length=3826745 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/201 (68%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 |||||| || | ||||| ||| ||||| || |||||| || | | ||| ||||| Sbjct 1501499 TCCTTTGCTAACAGGAGAGCCAGCATATGATTCATAAGGTCCATCATGGGCAGCTAGTTC 1501558 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659 |||||| || ||||| ||| ||||||||| || ||||| || | ||||| |||| | Sbjct 1501559 ACAACTGGCCTCCAAAGCAGCATAATATATGGTCTCAAAAATCTGGATGTTGAGATGCTG 1501618 Query 47660 TGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAAC 47719 |||||| |||||| ||||| || | ||||| | || ||||| Sbjct 1501619 GGCTTCTTCACTTTCAAATGGATAACGCATGAGAATGAAGGCGTCTGCAAGACCCTGAAC 1501678 Query 47720 ACCAATACCAATTGGTCTATG 47740 ||| || ||||| ||||| || Sbjct 1501679 ACCGATTCCAATAGGTCTGTG 1501699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561992021896800