Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq10289 161 8e-34 seq13501 123 2e-22 seq10290 102 7e-16 seq8916 93.3 3e-13 >seq10289 Length=12717785 Score = 161 bits (178), Expect = 8e-34 Identities = 383/573 (67%), Gaps = 18/573 (3%) Strand=Plus/Plus Query 550010 GGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAAT 550069 |||||||| || || || || |||| || |||| ||||| || || || |||||| Sbjct 4422633 GGAACCACCTACTCCTGCGTGGGCGTTTTCCAGCATGGCAAAGTGGAGATCATCGCCAAT 4422692 Query 550070 GATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTT 550129 || || || ||| | || || || ||| ||| | ||||| || || || || || Sbjct 4422693 GACCAGGGCAACCGCACCACCCCCAGTTACGTTGCCTTCACTGACACCGAGAGGCTAATT 4422752 Query 550130 GGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAATACTATTTTTGATGCT 550186 ||||| || || ||| | || | ||| || || || | || || || |||||||| Sbjct 4422753 GGTGACGCTGCTAAAAACCAGGTGGCCA-TG--AACCCGGCTAACACCATCTTTGATGCC 4422809 Query 550187 AAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGG 550246 || | | || || |||| ||| |||| | | ||| ||||| || ||||||| |||| Sbjct 4422810 AAGAGACTCATCGGGAGAAAATTTGATGACCCTATTGTGCAGGCTGACATGAAGCTTTGG 4422869 Query 550247 CCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCT 550306 |||||| || | | | || ||| || || | | ||| | |||| Sbjct 4422870 CCTTTCAAAGTGATCAGTGACAGTGGCAAGCCCAAAGTACAAGTGGAGTACAAAGG---- 4422925 Query 550307 GTTAAACAA-----TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAAC 550361 | | |||| || | |||||| |||| || || |||||||| | || ||||| Sbjct 4422926 -TGAGACAAAGGCGTTCTATCCAGAAGAAATCTCGTCAATGGTTTTGGTTAAGATGAAGG 4422984 Query 550362 AAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCAT 550421 ||| || || | | | || ||| ||| | ||||||| || || || || || | Sbjct 4422985 AAATTGCAGAGGCGTATTTGGGGCAAAGAGTGTCCAATGCAGTCATCACAGTCCCTGCTT 4423044 Query 550422 ATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATG 550481 |||| |||||||| || || ||||| || |||||||| ||| |||| |||| | |||| Sbjct 4423045 ATTTCAATGACTCCCAGCGCCAAGCCACAAAAGATGCAGGAGTTATTTCTGGTTTGAATG 4423104 Query 550482 TTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA-ACAT 550540 | || | || ||||||||||| ||||| || || |||||||||| || || || | Sbjct 4423105 TCCTGAGAATCATCAATGAACCAACTGCAGCAGCTATTGCATATGGTCTAGACAAGGGAA 4423164 Query 550541 AATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 || || || | ||||| |||||||||||| Sbjct 4423165 AAAGA-GGGGAGCGAAATGTTCTCATCTTTGAT 4423196 Score = 154 bits (170), Expect = 1e-31 Identities = 443/679 (65%), Gaps = 2/679 (0%) Strand=Plus/Plus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 || ||||| ||| | ||||| | |||| ||||| | || ||| | | || ||| | Sbjct 4423392 ACAGCTTGTGAACGCGCCAAGAGGACTCTATCATCCAGCACCCAAGCAAGCATCGAAATT 4423451 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 || || ||| |||||||||||| | | | || | || | | ||| ||||||||| Sbjct 4423452 GACTCTCTATATGAGGGAATTGACTTTTACACCTCAATCACTCGAGCCCGATTTGAAGAA 4423511 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092 | || || ||||| || ||| | || || || || ||| |||| |||| | Sbjct 4423512 CTAAACTCAGACCTCTTCAGGGGCACACTAGACCCTGTTGAGAAAGCTTTACAAGATGCC 4423571 Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||| | || |||||||| | | || ||||| || || || ||||| ||||||||||| Sbjct 4423572 AAGCTGGACAAATCCAAGATCAACGACATTGTCCTGGTGGGCGGATCCACAAGAATTCCC 4423631 Query 552153 AAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211 ||||| | || || | || ||| ||| ||||| | | || || |||| | || Sbjct 4423632 AAAATCCAAAAACTGCTGCAGGACTTCTTT-AATGGAAGGGACTTGAACAAAAGCATCAA 4423690 Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAAC 552271 || ||||| || || |||||||| || || | || || ||||| || || | || Sbjct 4423691 CCCGGATGAAGCCGTGGCCTATGGAGCTGCGGTCCAGGCTGCTATCCTGATGGGGGACAC 4423750 Query 552272 TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGA 552331 ||| || | || | | | || | |||||| |||| || ||| | || | || Sbjct 4423751 CTCTGAGAATGTCCAGGACCTCCTTCTGCTTGATGTTGCTCCACTGTCTTTGGGCATTGA 4423810 Query 552332 AACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAA 552391 |||| || || | ||||| || ||| | | || || || || || ||| | Sbjct 4423811 GACAGCAGGTGGAGTAATGACCGCACTGATCAAACGTAACACCACAATCCCCACCAAACA 4423870 Query 552392 ATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGA 552451 | | | | || || ||||| || |||||||| | | || || || | ||||| Sbjct 4423871 AACCCAGATCTTCTCCACGTACTCCGATAATCAGCCGGGAGTGCTCATCCAGGTCTTTGA 4423930 Query 552452 AGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTAT 552511 ||| ||||| | |||||||| ||||| | ||||| | ||| | | ||| || Sbjct 4423931 AGGTGAAAGGGCCATGACTAAAGACAATAACCTCCTTGGCAAGTTTGACCTGACAGGGAT 4423990 Query 552512 TCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGG 552571 || || || || | ||||| || || ||||| || || || || ||||| || ||||| Sbjct 4423991 CCCACCAGCCCCAAGAGGAGTCCCACAGATTGAGGTAACATTTGACATCGACGCTAATGG 4424050 Query 552572 AATTTTGAATGTGACTGCT 552590 ||| | |||||| ||||| Sbjct 4424051 CATTCTCAATGTGTCTGCT 4424069 >seq13501 Length=12216461 Score = 123 bits (136), Expect = 2e-22 Identities = 109/135 (81%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| ||||||| || || || || |||||||| || || || || || ||||||| Sbjct 9383478 ATGCAGTTGTAACTGTCCCTGCCTACTTCAATGACTCCCAGCGCCAGGCGACCAAAGATG 9383537 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||||||| |||||||| || ||||||||||||||||| || || || || Sbjct 9383538 CTGGAGCTATTGCTGGGCTTAATGTGCTGCGTATTATCAATGAACCAACGGCAGCAGCCA 9383597 Query 550518 TTGCATATGGACTTG 550532 |||| ||||| |||| Sbjct 9383598 TTGCCTATGG-CTTG 9383611 >seq10290 Length=4455921 Score = 102 bits (112), Expect = 7e-16 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || ||||| || |||||||| ||||| |||||| ||| ||||| |||| ||||| Sbjct 2171157 CTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGACAGAGTG 2171098 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||| || || || ||||||||||| || || |||||||| || ||||| ||| Sbjct 2171097 CGGCCGTCTTCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGAATGCCT 2171038 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 || || || ||||| || || || |||||| || || || | | || || | Sbjct 2171037 TCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCGCTG-GGCTCCACCTCCAA 2170979 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| | || || ||||| || ||||| || || || |||||| Sbjct 2170978 AGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCATA 2170936 Score = 100 bits (110), Expect = 2e-15 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||||||||| || |||||||||||||| |||||| || ||||| |||| ||||| Sbjct 2173305 CCTGAGACGAAGAACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGAGT 2173246 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | ||||| || || ||||| ||||| || | || |||||||| || ||||| || Sbjct 2173245 ACGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCC 2173186 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 ||| || || || || || || || ||| || || ||| || | | || || | Sbjct 2173185 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTG-GGCTCCACCTCCA 2173127 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| | || || ||||| || ||||| || || || |||||| Sbjct 2173126 GAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCATA 2173083 Score = 93.3 bits (102), Expect = 3e-13 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||| || || || | ||||| || |||||| || ||||| || | || || Sbjct 2173076 CTGAGGCGCAGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTA 2173017 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||| ||||| || || || ||||||||||| ||||| ||||| || ||||| ||| Sbjct 2173016 CGCCCATCCTCAAGCTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGGGGAATGCCT 2172957 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGA 563433 || || || ||||| || ||| || ||||| || ||| || | | || || Sbjct 2172956 TCCTTGTCCTGAATCTTAGCTTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCAAGG 2172897 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| |||||| || || || || || || || |||||||| Sbjct 2172896 GTAATAGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 2172856 >seq8916 Length=5461894 Score = 93.3 bits (102), Expect = 3e-13 Identities = 117/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 552465 TTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCT 552524 || || ||||| || ||| || ||||| || | || || ||||||||||| ||| Sbjct 3648255 TTGACAAAAGACAACCATCTGCTGGGTACCTTCGACCTAACTGGCATTCCTCCTGCCCCT 3648196 Query 552525 CGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTG 552584 ||||| ||||| ||||| || ||||| || || || |||| |||||| |||||| |||| Sbjct 3648195 CGTGGTGTACCCCAAATCGAGGTTACCTTTGAAATAGATGTCAATGGCATTTTGCGTGTG 3648136 Query 552585 ACTGCTTGTGATAA---ATCTAGCAACAAGAGTAAAAATA 552621 |||||| || || | ||||||||| ||||| || Sbjct 3648135 ACTGCTGAGGACAAGGGCACAGGCAACAAGAATAAAATTA 3648096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028417059443800