Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq9898 221 2e-52 seq1333 203 6e-47 seq2554 185 2e-41 seq12823 163 5e-35 seq16072 141 2e-28 seq11714 102 2e-16 seq9943 102 2e-16 seq6658 98.7 2e-15 >seq9898 Length=4754808 Score = 221 bits (244), Expect = 2e-52 Identities = 1000/1566 (64%), Gaps = 58/1566 (4%) Strand=Plus/Minus Query 212858 CATGTCCTCGTTCCAGAGGCCCCTGGTCTC-CAGGCACTTGACCAGGTGAGGGTTGACTA 212916 ||| ||||| ||||| || |||| | || |||| ||||| ||| || ||||| || | Sbjct 101364 CATTTCCTCATTCCACAGTCCCC-GTTCAGTCAGGTCCTTGAGCAGATGTGGGTTTACAA 101306 Query 212917 TCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGC 212976 |||| || || || ||||| || || | ||| | ||| ||||||| |||||| Sbjct 101305 TCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGG 101246 Query 212977 TCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGAC 213036 ||| ||||| || || || ||||| ||| || || |||||||| |||| || || | Sbjct 101245 ACTCATTGTTGCCTAGTATTTGTGCTGTGGAAGCAGTAGGCATGGGGGCCAACAACAGGC 101186 Query 213037 TGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAG 213096 |||||||||| || || | || | |||| ||||||||| ||| Sbjct 101185 TGTTCCTCACACCATGTTTAGTAATCTTCTCCTTAAGCAGCTTCCAGTCCCAGAGCGCAG 101126 Query 213097 ACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGC 213156 | | ||| || | ||||||||| | |||| ||||| || ||||| || Sbjct 101125 TCGGCACCT--TC-------TCCCACATGTCGTATTGCAGAATGCCCTTACTCACTGGAG 101075 Query 213157 TGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGG 213216 || |||| | || || || | | | || | ||||||| |||| ||||| Sbjct 101074 AACCTGGGTATGTCTCATAAGGCCCGTCTTTTTCTGCTAACTCGCAGCTTGCCTCCAGGG 101015 Query 213217 CAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGAC-GTG 213275 | |||||||| || || ||||| |||| |||| ||| || ||| || |||| | Sbjct 101014 CGGCGTAGTATATTGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCTTC--AGGACTTTC 100957 Query 213276 AAGGGCATCA-TCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGG 213334 || | || | |||| | ||| |||| || || ||||| || || || ||||| || Sbjct 100956 AAATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACTCCAATTCCGATTGG 100897 Query 213335 TCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAG----GGGTAAAAGTTGCAGTCGA 213390 ||||| | | ||| || || | | || || | ||||| |||| ||| | Sbjct 100896 CCTGTGGCGCTTGTTCGAGTT----CTCGGCTTCAGGGACTGGGTAGTAGTTAATGTCAA 100841 Query 213391 TGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGA 213450 |||||||||||||||| | ||||| |||||| ||| || | |||| Sbjct 100840 TGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACAGAGGCAAG------CTTTTTGA 100787 Query 213451 ACACGTAGCCCCCGTCCTGCACAAAC--TCAGG--CAGGGCGATGCTGGCCAGGTTGCAA 213506 | | || |||| ||| | ||| || | || || || |||| ||| || Sbjct 100786 AGTCAAAG-GTCCGTTCTGGAGTAACATACATGTTAAGAGCAATAGAAGCCAAGTTACAG 100728 Query 213507 ACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGG 213566 ||||| ||||| | | ||| ||||||| ||||| ||||||| ||| |||||| | Sbjct 100727 ACGGCTACCTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAGTTACTGCATTTG 100668 Query 213567 ATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAG 213626 || ||||||| ||||| || || ||| ||| | ||| ||||| | |||||| Sbjct 100667 ATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAA 100608 Query 213627 GGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC--TCCAGAGGTACCTGGCCTTGA 213684 || | || || || ||| ||| | | | |||| ||| | | | ||||||| Sbjct 100607 GGAGTTCCTGTTTCAGTCTGAGACTCTATGA--TGGCATACCACACCTGCTGAGCCTTGA 100550 Query 213685 CCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGT 213744 ||||||| | || || | | | |||||| | ||| |||| | || || | Sbjct 100549 CCACCCGTTTCAC-TCTGCCTTCCT--GCTCGTAGCGAGTGTACAGCTTCTCAAACTCCT 100493 Query 213745 GGCCCCAGACCCT-GTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCG 213803 ||||| || || ||||| || || || ||| ||||| | ||||||| | Sbjct 100492 CCCCCCA-ACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTGG 100434 Query 213804 TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTG 213863 | | | || |||| |||||||| || |||| ||| || || ||| ||||| | Sbjct 100433 TTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGCATAGAAGAGGTCTCGT 100374 Query 213864 GTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCG 213923 | |||| ||| || |||| ||| || | || || |||||||| | ||| | Sbjct 100373 GCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTTAACTCAAGGAAGTCAAACACGTCAAAG 100314 Query 213924 TGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCC---TCTTGCCGCCCTGGTCCACC 213980 ||||| ||||| | ||| ||||||||||| || || | | ||||| || |||||||| Sbjct 100313 TGCCATGGCTCAAGGTACATGGCAAAGGCACCAGGTCGTTTATTGCCACCTTGGTCCACG 100254 Query 213981 AGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTG 214040 | ||| ||||| | | | ||| | || || || || || || | || || Sbjct 100253 TAGCGCGCCGTGTTGTTGTACACCCTCAGCATTGGCACAAGGCCATTTGAATTACCATTT 100194 Query 214041 GTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCG 214100 ||||| || || || || | | || | | ||| | | | || || || || Sbjct 100193 GTTCCAGCAATGTAGCTTCCTGTTGATCTAATGCAGCTAACTGCTACACCAATCCCTCCT 100134 Query 214101 GCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCA 214160 || | |||||||| | ||||| | | | || || ||||| | ||||||||| Sbjct 100133 GCAGATTTGGAGATGAGAGCGCATTGTTTGAGTGTATCATAAATGCCATCAATGCTGTCA 100074 Query 214161 TCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAA 214220 || | | | ||||| |||||| || |||||||| || ||| | ||| | ||||| Sbjct 100073 TCCTTCATGGCCAGCAGGAAGCAACTAGAGAGCTGTGGTCTGTTGGTGCCTGCATTGAAC 100014 Query 214221 AGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACT 214280 || ||||| |||||| | | |||| | ||| || || |||||||||| | | || Sbjct 100013 AGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCT 99954 Query 214281 GAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTC 214340 | || || |||||||| | ||| ||||| ||||||||||| || | | Sbjct 99953 GCATCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAGCATGTGCTGTGGACGC 99894 Query 214341 TCTATGGGTCCTTTGGGGCCCTTG------AGCAGGTAGGAGCGCTCCAGAGTCTTGAAC 214394 || | |||| ||| ||| ||||||||||||||||| || ||||| || Sbjct 99893 TC--AGCCACCTT----GCCATTGATTTTCAGCAGGTAGGAGCGCTCTAGGGTCTTAAAG 99840 Query 214395 CCAAAG 214400 |||||| Sbjct 99839 CCAAAG 99834 >seq1333 Length=3002836 Score = 203 bits (224), Expect = 6e-47 Identities = 192/245 (78%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||||||||| || | |||| |||||||| ||||||||| || ||||||||||||| Sbjct 1377770 GCTGACAGCCGCTGCTTACGTGCGTCAGGACCTTCTGTTTGAGCTGAGCCACCTGGTCCC 1377829 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 |||| || ||||| || |||||||| || ||||||||| || ||||| || ||||| | Sbjct 1377830 GCAGCACTGACGCCGTGTTGGACAGCCCCGCGTTGTCACTTTTCAGCACTTTTACTTTTT 1377889 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||||| ||| || ||||| || || ||||| || ||||||||||| || |||| |||| Sbjct 1377890 CCTCCAACCGGGCAATGCGCTCGAGCTTGCGTCGCCGGCATTTGGTAGCAGCCAGTCGGT 1377949 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGACT 241628 ||| || ||||| | || || ||||| || |||||| ||||| |||||||| ||| Sbjct 1377950 TCCTCAGCCTCTTCCTCTCGGCTTTGATCCGCTCCTGGGTCTCCAGATCGATCGGGGACA 1378009 Query 241629 TGGGT 241633 | ||| Sbjct 1378010 TTGGT 1378014 >seq2554 Length=1717727 Score = 185 bits (204), Expect = 2e-41 Identities = 183/237 (77%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 241391 TGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGC 241450 || ||||| || || |||| || ||| | |||||||||||||| ||||| || ||| Sbjct 1068239 TGGCAGCCACTGCTCACGTGCGTCATGACTTTTTGTTTGAGTTGGGCTACCTGCTCGCGC 1068298 Query 241451 AGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCC 241510 || || ||||| || || |||||||| |||||||| | || || || |||||||| || Sbjct 1068299 AGCACAGACGCAGTGTTTGACAGTCCAGCGTTGTCCGTTTTCAGGACTTTCACTTTTTCT 1068358 Query 241511 TCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTC 241570 ||||| || || || ||||||||||| || | |||||||||| |||||||| |||||| Sbjct 1068359 TCCAGACGAGCAATACGTTCCAGTTTTCGTCTCCGGCATTTGGAGGCTGCCAGTCGGTTC 1068418 Query 241571 CGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 | || | ||| || || || |||||||| ||||||| ||||| || || |||||| Sbjct 1068419 CTCAGACGCTTGCGCTCGGCTTTGATGCGCTCCTGGTTCTCCAAATCAATAGGAGAC 1068475 >seq12823 Length=200414 Score = 163 bits (180), Expect = 5e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||||||||| || |||||||||||||||| ||||||||||| | ||| Sbjct 162487 AGCACCTTCTGTTTGAGCTGCTCCACCTGGTCCCGCAGGACGGACGCGGTGGACGCCAGG 162428 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | | ||| || ||||||||| ||||| ||||||| ||| || |||||| Sbjct 162427 TCCGTGTTCTGACTCTTCAGACTCTTCACTTTGTCCTCGAGCCGCGAGATTCGCTCCAGT 162368 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 ||||| |||||||| |||| || || | |||||| || || | ||| || || |||||| Sbjct 162367 TTGCGGCGGCGGCACTTGGACGCGGCGATGCGGTTGCGCAGGCGCTTCCGCTCGGCCTTG 162308 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 162307 ATGCGCTCCTGAGAGTCCATGTCGATGGGGGAC 162275 >seq16072 Length=2121480 Score = 141 bits (156), Expect = 2e-28 Identities = 167/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 241402 GCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGC 241461 || || ||| | || ||||| ||||||||| || |||||||| || ||||| ||| ||| Sbjct 61825 GCTCACGTGACTCATGACCTTCTGTTTGAGCTGTGCCACCTGCTCGCGCAGGACGCTCGC 61766 Query 241462 GGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGC 241521 ||| | ||| | | ||| | | || || ||| ||||| ||||| ||||| | Sbjct 61765 GGTGGACGCCAGCTCAGTGTTCTGTGTTTTTAGTGTCTTTACTTTGTCCTCGAGCCGTGA 61706 Query 241522 GATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTT 241581 ||| || |||||||| || |||||| |||| ||| || | |||||| || || |||| Sbjct 61705 GATACGCTCCAGTTTACGTTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCTTCTT 61646 Query 241582 ACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 || |||||||||||||| ||||||| |||||||| || || ||| Sbjct 61645 CCGCTCCGCCTTGATGCGCTCCTGGTTGTCCATGTCAATGGGCGAC 61600 >seq11714 Length=3826745 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 ||| || || ||||| |||||||| | ||||| ||| ||||| ||||| ||| Sbjct 1500824 CTGAAACTCCCCTGAAAGCACCCTGCGAGTGTAAATGTTGCTGGTGTAAGGCTCAATGGA 1500883 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 || ||||| || || ||||| |||||| |||||||||||| || |||| ||||| || Sbjct 1500884 TTCATTGTTGCCAAGGATCTGGGCAGTGGAGGCTGTGGGCATAGGGGCCAGGAGGAGGCT 1500943 Query 213038 GTTCCTCACTCCGTGC 213053 |||||||||||| ||| Sbjct 1500944 GTTCCTCACTCCATGC 1500959 >seq9943 Length=499256 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | ||||||||| ||||||||||| || || ||||| | || | | ||| Sbjct 292076 TCGTCTCTGCTGATGAGTTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCTTG 292017 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||||||||| || ||||| || |||||||||||||| ||||| || || |||||||| Sbjct 292016 AGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATCCCCTCGACAGCGGCGAACGC 291958 >seq6658 Length=7564740 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 38960 CACCAGCTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGT 39019 ||| || ||||| |||||||| |||||||||||||| || | |||||| |||| || | Sbjct 4485509 CACTAGTTCCCATCTGTTGGCAGAGAAGAGCAGGTGCACAGTGTGGTCCTCCAAATCACT 4485450 Query 39020 CTTACTCTCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTCGGG 39073 || |||||||||| | ||||||| || ||| ||||| ||||| ||||| || Sbjct 4485449 TTTCTTCTCCAGGTAGGCACTGATCAGCTGTCCAATGGTGGTGGTCCTGTCTGG 4485396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931339274060800