Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq10289 199 3e-45 seq10290 136 3e-26 seq11382 127 1e-23 seq13501 100 2e-15 >seq10289 Length=12717785 Score = 199 bits (220), Expect = 3e-45 Identities = 399/587 (68%), Gaps = 16/587 (3%) Strand=Plus/Plus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 ||||| ||||| | ||||| || ||| || || | |||| || |||| ||||| Sbjct 4422618 ATTGGCATTGACCTGGGAACCACCTACTCCTGCGTGGGCGTTTTCCAGCATGGCAAAGTG 4422677 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || || ||||||||||| || || | || || || || ||| | || ||||| Sbjct 4422678 GAGATCATCGCCAATGACCAGGGCAACCGCACCACCCCCAGTTACGTTGCCTTCACTGAC 4422737 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || || ||||| || ||||||||| | || | || || || | ||| || Sbjct 4422738 ACCGAGAGGCTAATTGGTGACGCTGCTAAAAACCAGGTGGCCATGAACCCGGCTAACACC 4422797 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 || |||||||| || ||| | || || | || |||||||| | | ||| || |||| Sbjct 4422798 ATCTTTGATGCCAAGAGACTCATCGGGAGAAAATTTGATGACCCTATTGTGCAGGCTGAC 4422857 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| | ||||||||| || ||||| | || |||| || || | || ||| | Sbjct 4422858 ATGAAGCTTTGGCCTTTCAAAGTGATCAGTGACAGTGGCAAGCCCAAAGTACAAGTGGAG 4422917 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 |||| |||||| || || || | || ||| |||| || ||||||||||| | | Sbjct 4422918 TACAA--AGGTGAGACAAAGGCGTTCTATCCAGAAGAAATCTCGTCAATGGTTTTGGTTA 4422975 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | ||||| ||| || ||| | ||| | || ||| ||| | ||||||| || || Sbjct 4422976 AGATGAAGGAAATTGCAGAG-GCGTATTTGGGGCAAAGAGTGTCCAATGCAGTCATCACA 4423034 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || ||||| ||||| || || || ||||| || |||||||| ||| ||| | Sbjct 4423035 GTCCCTGCTTATTTCAATGACTCCCAGCGCCAAGCCACAAAAGATGCAGGAGTTATTTCT 4423094 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||| | ||||| | | || || ||||||||||| ||||| || |||| |||||||| Sbjct 4423095 GGTTTGAATGTCCTGAGAATCATCAATGAACCAACTGCAGCAGCTATTGCATATGGTCTA 4423154 Query 474869 GATAAGAATTCTGACAAAGAAG-----TAAATGTTTTAATCTTTGAT 474910 || ||| || ||||| | ||||||| | ||||||||| Sbjct 4423155 GACAAG-----GGAAAAAGAGGGGAGCGAAATGTTCTCATCTTTGAT 4423196 Score = 196 bits (216), Expect = 3e-44 Identities = 571/870 (66%), Gaps = 12/870 (1%) Strand=Plus/Plus Query 475310 GGAACTCATGACGTAACTTTACTATCACTCGAAGATGGTCTTTTCTCTGTAAGAGCAACA 475369 || ||| ||||||| | | || || | |||||||| |||| || | ||| ||| Sbjct 4423206 GGCACTTTTGACGTATCCATTCTGACAATTGAAGATGGCATTTTTGAGGTGAAAGCCACA 4423265 Query 475370 GCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATGGTGTG 475427 |||||||| |||| | ||||| ||||| ||||| ||| | | || | || | || Sbjct 4423266 GCTGGAGACACACACTTGGGTGGAGAAGACTTTGACAATCGCATGGTGAAGCAC--TTTG 4423323 Query 475428 TTGAAGATTTCAAGAGGAAAAATAAAGTTGA--TCTTTCAACATCTGCTAAAGCATTAAG 475485 |||| || || ||||| || | ||| || || ||| | | | ||| | || Sbjct 4423324 TTGATGAGTTTAAGAGAAAGCACAAAAAAGACATCAGCCAAAACAAG--AGAGCGGTGAG 4423381 Query 475486 ACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTAC 475545 | || | || ||||||||||| || ||| | |||| || || || ||| | | Sbjct 4423382 GAGGCTGCGTACAGCTTGTGAACGCGCCAAGAGGACTCTATCATCCAGCACCCAAGCAAG 4423441 Query 475546 TGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAA 475605 | ||| |||| ||||| | ||| |||||||| | | | || || || | || Sbjct 4423442 CATCGAAATTGACTCTCTATATGAGGGAATTGACTTTTACACCTCAATCACTCGAGCCCG 4423501 Query 475606 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT 475665 ||||||||| | || || ||||| || ||| | || || ||||| ||| | | Sbjct 4423502 ATTTGAAGAACTAAACTCAGACCTCTTCAGGGGCACACTAGACCCTGTTGAGAAAGCTTT 4423561 Query 475666 CAGAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724 |||| | || || |||||||| |||| || | || ||||| || || || || || | Sbjct 4423562 ACAAGATGCCAAGCTGGACAAATC-CAAGATCAACGACATTGTCCTGGTGGGCGGATCCA 4423620 Query 475725 CAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAAT 475783 |||||||||| ||||| | || ||| | || | | |||||||| | | || || Sbjct 4423621 CAAGAATTCCCAAAATCCAAAAACTGC-TGCAGGACTTCTTTAATGGAAGGGACTTGAAC 4423679 Query 475784 GAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843 |||| | || || |||||||| || || ||||||||||| ||||| || ||||| | Sbjct 4423680 AAAAGCATCAACCCGGATGAAGCCGTGGCCTATGGAGCTGCGGTCCAGGCTGCTATCCTG 4423739 Query 475844 TCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCA 475903 || | | ||||| | | | | | || |||| || ||||||| || Sbjct 4423740 ATGGGGGACACCTCTGAGAATGTCCAGGACCTCCTTCTGCTTGATGTTGCTCCACTGTCT 4423799 Query 475904 TTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATC 475963 || || |||| |||| || || | ||||| || || | | || || | ||| Sbjct 4423800 TTGGGCATTGAGACAGCAGGTGGAGTAATGACCGCACTGATCAAACGTAACACCACAATC 4423859 Query 475964 CCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATC 476023 || |||| || | | | || ||||| || || |||||||| | || |||| Sbjct 4423860 CCCACCAAACAAACCCAGATCTTCTCCACGTACTCCGATAATCAGCCGGGAGTGCTCATC 4423919 Query 476024 CAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAAT 476083 || |||||||||||||||| | |||||||| |||||| ||||| | ||| | Sbjct 4423920 CAGGTCTTTGAAGGTGAAAGGGCCATGACTAAAGACAATAACCTCCTTGGCAAGTTTGAC 4423979 Query 476084 CTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATT 476143 || ||| || || || || || |||||||| || || ||||| || || ||||| || Sbjct 4423980 CTGACAGGGATCCCACCAGCCCCAAGAGGAGTCCCACAGATTGAGGTAACATTTGACATC 4424039 Query 476144 GATGCAAATGGTATTCTTAATGTTACTGCT 476173 || || ||||| ||||| ||||| ||||| Sbjct 4424040 GACGCTAATGGCATTCTCAATGTGTCTGCT 4424069 >seq10290 Length=4455921 Score = 136 bits (150), Expect = 3e-26 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| ||||| ||||| |||||||||||||| | ||||||||| || ||||| |||||||| Sbjct 2173011 ATCCTCAAGCTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGGGGAATGCCTTCCTT 2172952 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| |||||||| ||| || |||||| || ||| || | | ||||||||||| Sbjct 2172951 GTCCTGAATCTTAGCTTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAAT 2172892 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| |||||||| ||||| || || ||||| Sbjct 2172891 AGTTTTGCCGGTGAGGGTCTTGACAAAGATTTG 2172859 Score = 91.5 bits (100), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || || |||||| | || || |||| || || | | Sbjct 2170926 AGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 2170867 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| ||||| ||||| || ||||| || | | || ||||| || ||||| |||||| Sbjct 2170866 CCATCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCC 2170807 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| |||||||| || ||| |||||| || || || | |||||||| Sbjct 2170806 TTGTCCTGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCACCTCAAGGGTG 2170747 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || ||||| || || || || || || Sbjct 2170746 ATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTG 2170712 Score = 89.7 bits (98), Expect = 3e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || || |||||| || || || |||| ||||| | | Sbjct 2171154 AGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGG 2171095 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||||| || ||||| || |||||||| || | || ||||| || ||||| |||||| Sbjct 2171094 CCGTCTTCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 2171035 Query 480675 TTGTCTTGAATCTT 480688 ||||| |||||||| Sbjct 2171034 TTGTCCTGAATCTT 2171021 >seq11382 Length=3889881 Score = 127 bits (140), Expect = 1e-23 Identities = 363/546 (66%), Gaps = 14/546 (3%) Strand=Plus/Minus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || ||||| | || || || ||| ||||| | || | ||| | || ||||| ||| Sbjct 1094031 GGCATTGACCTGGGCACCACATACTCCTGTGTGGGGGTCTTTCAACACGGAAAAGTGGAA 1093972 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || || || |||||||| || || ||||| || || ||||| |||| || || ||| Sbjct 1093971 ATCATCGCTAATGACCAGGGCAACAGAACCACCCCCAGCTATGTGGCTTTCACCGACACT 1093912 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT-AATCCTGTTAATACTAT 474513 || | ||| |||||||||||||| || | | || || ||| || || || || | Sbjct 1093911 GAGCGTCTCATTGGAGATGCTGC-CAAGAACCAGGTGGCTCTGAACCCCAACAACACAGT 1093853 Query 474514 TTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATAT 474573 |||||||| || || ||||||| || | |||||||| |||| || || | || || Sbjct 1093852 GTTTGATGCCAAGAGGCTGATTGGCCGCAGGTTTGATGACTCCACAGTGCAGGCCGACAT 1093793 Query 474574 GCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT-AGA-AGCAATA 474631 | || ||||| ||||||||| | | || |||||||||| | || ||| | | || Sbjct 1093792 GAAGCACTGGCCCTTTAAGGTGGTGAGTGACAGTGGTAAACCTAAGATCAGAGTGGAGTA 1093733 Query 474632 CACGCAGGTGAA-ACTAAACAATTTTCA--CCGGAACAAATTTCTTCAATGGTTTTAGCC 474688 || | || ||| || | || |||| || || |||| || || |||||| | | Sbjct 1093732 CAAG--GGAGAAGACAAGAC---CTTCAGCCCAGAGGAAATCTCCTCCATGGTTCTGGTG 1093678 Query 474689 AAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTAC 474747 || ||||| | || ||| | || || || || | || | | ||||| || || Sbjct 1093677 AAGATGAAGGAGGTGGCAGAG-GCCTACCTGGGCCACAAGGTGTCCAACGCAGTGATCAC 1093619 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 || ||||| || || || || || || | || || |||||||| || || ||||| Sbjct 1093618 AGTCCCAGCCTACTTCAACGACTCCCAGAGACAGGCCACTAAAGACGCAGGTGTGATTGC 1093559 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 || || || || | | || || || || || || || ||||| | || || || || Sbjct 1093558 CGGACTCAACGTCCTGAGAATCATCAACGAGCCTACGGCCGCCGCTATCGCCTACGGCCT 1093499 Query 474868 TGATAA 474873 || || Sbjct 1093498 GGACAA 1093493 Score = 118 bits (130), Expect = 7e-21 Identities = 361/546 (66%), Gaps = 14/546 (3%) Strand=Plus/Plus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || ||||| | || || || ||| ||||| | || | ||| | || ||||| ||| Sbjct 944327 GGCATTGACCTGGGCACCACATACTCCTGTGTGGGGGTCTTCCAACACGGAAAAGTGGAA 944386 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || || || |||||||| || || || || || || ||||| |||| || || ||| Sbjct 944387 ATCATCGCTAATGACCAGGGCAACAGGACCACTCCCAGCTATGTGGCTTTCACCGACACT 944446 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT-AATCCTGTTAATACTAT 474513 || | || || ||||||||||| || | | || || ||| || || || || | Sbjct 944447 GAGCGCCTCATCGGAGATGCTGC-CAAGAACCAGGTGGCTCTGAACCCCAACAACACAGT 944505 Query 474514 TTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATAT 474573 |||||||| || || ||||||| || | |||||||| |||| || || | || || Sbjct 944506 GTTTGATGCCAAGAGGCTGATTGGCCGCAGGTTTGATGACTCCACAGTGCAGGCCGACAT 944565 Query 474574 GCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT-AGA-AGCAATA 474631 | || ||||| ||||||||| | | || |||||||||| | || ||| | | || Sbjct 944566 GAAGCACTGGCCCTTTAAGGTGGTGAGTGACAGTGGTAAACCTAAGATCAGAGTGGAGTA 944625 Query 474632 CACGCAGGTGAA-ACTAAACAATTTTCA--CCGGAACAAATTTCTTCAATGGTTTTAGCC 474688 || | || ||| || | || |||| || || |||| || || |||||| | | Sbjct 944626 CAAG--GGAGAAGACAAGAC---CTTCAGCCCAGAGGAAATCTCCTCCATGGTTCTGGTG 944680 Query 474689 AAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTAC 474747 || ||||| | || ||| | || || || || | || | | ||||| || || Sbjct 944681 AAGATGAAGGAGGTGGCAGAG-GCCTACCTGGGCCACAAGGTGTCCAACGCAGTGATCAC 944739 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 || ||||| || || || || || || | || || |||||||| || || || || Sbjct 944740 AGTCCCAGCCTACTTCAACGACTCCCAGAGACAGGCCACTAAAGACGCAGGTGTGATCGC 944799 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 || || || ||| | | || || ||||| || || || ||||| | || || || || Sbjct 944800 CGGACTCAACGTTCTGAGAATCATCAATGAGCCTACGGCTGCCGCTATCGCCTACGGCCT 944859 Query 474868 TGATAA 474873 || || Sbjct 944860 GGACAA 944865 >seq13501 Length=12216461 Score = 100 bits (110), Expect = 2e-15 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| | ||||| || || || || ||||| || || || || || || ||||||| Sbjct 9383478 ATGCAGTTGTAACTGTCCCTGCCTACTTCAATGACTCCCAGCGCCAGGCGACCAAAGATG 9383537 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| || |||||||| | |||||||| ||||||||||| ||||| || Sbjct 9383538 CTGGAGCTATTGCTGGGCTTAATGTGCTGCGTATTATCAATGAACCAACGGCAGCAGCCA 9383597 Query 474855 TTGCTTATGGTCTTG 474869 |||| ||||| |||| Sbjct 9383598 TTGCCTATGG-CTTG 9383611 Score = 91.5 bits (100), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||| || | |||||||| || |||| || |||| ||| | || || Sbjct 9384609 TGAAGGTGAGAGGGCCATGACTAAAGACAACAACATCCTGGGAAAGTTTGAGCTCACTGG 9384668 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 ||| || |||||||| ||||| || || || ||||| || || ||||| || ||||| || Sbjct 9384669 TATCCCACCTGCTCCAAGAGGTGTCCCCCAGATTGAGGTGACCTTTGACATAGATGCCAA 9384728 Query 476152 TGGTATTCTTAATGT 476166 |||||||||||| || Sbjct 9384729 TGGTATTCTTAACGT 9384743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267466287559760