Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq10289 199 3e-45
seq10290 136 3e-26
seq11382 127 1e-23
seq13501 100 2e-15
>seq10289
Length=12717785
Score = 199 bits (220), Expect = 3e-45
Identities = 399/587 (68%), Gaps = 16/587 (3%)
Strand=Plus/Plus
Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391
||||| ||||| | ||||| || ||| || || | |||| || |||| |||||
Sbjct 4422618 ATTGGCATTGACCTGGGAACCACCTACTCCTGCGTGGGCGTTTTCCAGCATGGCAAAGTG 4422677
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451
|| || || ||||||||||| || || | || || || || ||| | || |||||
Sbjct 4422678 GAGATCATCGCCAATGACCAGGGCAACCGCACCACCCCCAGTTACGTTGCCTTCACTGAC 4422737
Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511
|| || || ||||| || ||||||||| | || | || || || | ||| ||
Sbjct 4422738 ACCGAGAGGCTAATTGGTGACGCTGCTAAAAACCAGGTGGCCATGAACCCGGCTAACACC 4422797
Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571
|| |||||||| || ||| | || || | || |||||||| | | ||| || ||||
Sbjct 4422798 ATCTTTGATGCCAAGAGACTCATCGGGAGAAAATTTGATGACCCTATTGTGCAGGCTGAC 4422857
Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629
||| | ||||||||| || ||||| | || |||| || || | || ||| |
Sbjct 4422858 ATGAAGCTTTGGCCTTTCAAAGTGATCAGTGACAGTGGCAAGCCCAAAGTACAAGTGGAG 4422917
Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689
|||| |||||| || || || | || ||| |||| || ||||||||||| | |
Sbjct 4422918 TACAA--AGGTGAGACAAAGGCGTTCTATCCAGAAGAAATCTCGTCAATGGTTTTGGTTA 4422975
Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748
| ||||| ||| || ||| | ||| | || ||| ||| | ||||||| || ||
Sbjct 4422976 AGATGAAGGAAATTGCAGAG-GCGTATTTGGGGCAAAGAGTGTCCAATGCAGTCATCACA 4423034
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
|| || || ||||| ||||| || || || ||||| || |||||||| ||| ||| |
Sbjct 4423035 GTCCCTGCTTATTTCAATGACTCCCAGCGCCAAGCCACAAAAGATGCAGGAGTTATTTCT 4423094
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
||| | ||||| | | || || ||||||||||| ||||| || |||| ||||||||
Sbjct 4423095 GGTTTGAATGTCCTGAGAATCATCAATGAACCAACTGCAGCAGCTATTGCATATGGTCTA 4423154
Query 474869 GATAAGAATTCTGACAAAGAAG-----TAAATGTTTTAATCTTTGAT 474910
|| ||| || ||||| | ||||||| | |||||||||
Sbjct 4423155 GACAAG-----GGAAAAAGAGGGGAGCGAAATGTTCTCATCTTTGAT 4423196
Score = 196 bits (216), Expect = 3e-44
Identities = 571/870 (66%), Gaps = 12/870 (1%)
Strand=Plus/Plus
Query 475310 GGAACTCATGACGTAACTTTACTATCACTCGAAGATGGTCTTTTCTCTGTAAGAGCAACA 475369
|| ||| ||||||| | | || || | |||||||| |||| || | ||| |||
Sbjct 4423206 GGCACTTTTGACGTATCCATTCTGACAATTGAAGATGGCATTTTTGAGGTGAAAGCCACA 4423265
Query 475370 GCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATGGTGTG 475427
|||||||| |||| | ||||| ||||| ||||| ||| | | || | || | ||
Sbjct 4423266 GCTGGAGACACACACTTGGGTGGAGAAGACTTTGACAATCGCATGGTGAAGCAC--TTTG 4423323
Query 475428 TTGAAGATTTCAAGAGGAAAAATAAAGTTGA--TCTTTCAACATCTGCTAAAGCATTAAG 475485
|||| || || ||||| || | ||| || || ||| | | | ||| | ||
Sbjct 4423324 TTGATGAGTTTAAGAGAAAGCACAAAAAAGACATCAGCCAAAACAAG--AGAGCGGTGAG 4423381
Query 475486 ACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTAC 475545
| || | || ||||||||||| || ||| | |||| || || || ||| | |
Sbjct 4423382 GAGGCTGCGTACAGCTTGTGAACGCGCCAAGAGGACTCTATCATCCAGCACCCAAGCAAG 4423441
Query 475546 TGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAA 475605
| ||| |||| ||||| | ||| |||||||| | | | || || || | ||
Sbjct 4423442 CATCGAAATTGACTCTCTATATGAGGGAATTGACTTTTACACCTCAATCACTCGAGCCCG 4423501
Query 475606 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT 475665
||||||||| | || || ||||| || ||| | || || ||||| ||| | |
Sbjct 4423502 ATTTGAAGAACTAAACTCAGACCTCTTCAGGGGCACACTAGACCCTGTTGAGAAAGCTTT 4423561
Query 475666 CAGAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724
|||| | || || |||||||| |||| || | || ||||| || || || || || |
Sbjct 4423562 ACAAGATGCCAAGCTGGACAAATC-CAAGATCAACGACATTGTCCTGGTGGGCGGATCCA 4423620
Query 475725 CAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAAT 475783
|||||||||| ||||| | || ||| | || | | |||||||| | | || ||
Sbjct 4423621 CAAGAATTCCCAAAATCCAAAAACTGC-TGCAGGACTTCTTTAATGGAAGGGACTTGAAC 4423679
Query 475784 GAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843
|||| | || || |||||||| || || ||||||||||| ||||| || ||||| |
Sbjct 4423680 AAAAGCATCAACCCGGATGAAGCCGTGGCCTATGGAGCTGCGGTCCAGGCTGCTATCCTG 4423739
Query 475844 TCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCA 475903
|| | | ||||| | | | | | || |||| || ||||||| ||
Sbjct 4423740 ATGGGGGACACCTCTGAGAATGTCCAGGACCTCCTTCTGCTTGATGTTGCTCCACTGTCT 4423799
Query 475904 TTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATC 475963
|| || |||| |||| || || | ||||| || || | | || || | |||
Sbjct 4423800 TTGGGCATTGAGACAGCAGGTGGAGTAATGACCGCACTGATCAAACGTAACACCACAATC 4423859
Query 475964 CCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATC 476023
|| |||| || | | | || ||||| || || |||||||| | || ||||
Sbjct 4423860 CCCACCAAACAAACCCAGATCTTCTCCACGTACTCCGATAATCAGCCGGGAGTGCTCATC 4423919
Query 476024 CAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAAT 476083
|| |||||||||||||||| | |||||||| |||||| ||||| | ||| |
Sbjct 4423920 CAGGTCTTTGAAGGTGAAAGGGCCATGACTAAAGACAATAACCTCCTTGGCAAGTTTGAC 4423979
Query 476084 CTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATT 476143
|| ||| || || || || || |||||||| || || ||||| || || ||||| ||
Sbjct 4423980 CTGACAGGGATCCCACCAGCCCCAAGAGGAGTCCCACAGATTGAGGTAACATTTGACATC 4424039
Query 476144 GATGCAAATGGTATTCTTAATGTTACTGCT 476173
|| || ||||| ||||| ||||| |||||
Sbjct 4424040 GACGCTAATGGCATTCTCAATGTGTCTGCT 4424069
>seq10290
Length=4455921
Score = 136 bits (150), Expect = 3e-26
Identities = 122/153 (80%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||| ||||| ||||| |||||||||||||| | ||||||||| || ||||| ||||||||
Sbjct 2173011 ATCCTCAAGCTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGGGGAATGCCTTCCTT 2172952
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
||| |||||||| ||| || |||||| || ||| || | | |||||||||||
Sbjct 2172951 GTCCTGAATCTTAGCTTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAAT 2172892
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||||| |||||||| ||||| || || |||||
Sbjct 2172891 AGTTTTGCCGGTGAGGGTCTTGACAAAGATTTG 2172859
Score = 91.5 bits (100), Expect = 1e-12
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614
||||| || |||||||| || || |||||| | || || |||| || || | |
Sbjct 2170926 AGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 2170867
Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674
||| ||||| ||||| || ||||| || | | || ||||| || ||||| ||||||
Sbjct 2170866 CCATCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCC 2170807
Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734
||||| |||||||| || ||| |||||| || || || | ||||||||
Sbjct 2170806 TTGTCCTGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCACCTCAAGGGTG 2170747
Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| ||||| || ||||| || || || || || ||
Sbjct 2170746 ATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTG 2170712
Score = 89.7 bits (98), Expect = 3e-12
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614
||||| || |||||||| || || |||||| || || || |||| ||||| | |
Sbjct 2171154 AGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGG 2171095
Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674
||||| || ||||| || |||||||| || | || ||||| || ||||| ||||||
Sbjct 2171094 CCGTCTTCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 2171035
Query 480675 TTGTCTTGAATCTT 480688
||||| ||||||||
Sbjct 2171034 TTGTCCTGAATCTT 2171021
>seq11382
Length=3889881
Score = 127 bits (140), Expect = 1e-23
Identities = 363/546 (66%), Gaps = 14/546 (3%)
Strand=Plus/Minus
Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394
|| ||||| | || || || ||| ||||| | || | ||| | || ||||| |||
Sbjct 1094031 GGCATTGACCTGGGCACCACATACTCCTGTGTGGGGGTCTTTCAACACGGAAAAGTGGAA 1093972
Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454
|| || || |||||||| || || ||||| || || ||||| |||| || || |||
Sbjct 1093971 ATCATCGCTAATGACCAGGGCAACAGAACCACCCCCAGCTATGTGGCTTTCACCGACACT 1093912
Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT-AATCCTGTTAATACTAT 474513
|| | ||| |||||||||||||| || | | || || ||| || || || || |
Sbjct 1093911 GAGCGTCTCATTGGAGATGCTGC-CAAGAACCAGGTGGCTCTGAACCCCAACAACACAGT 1093853
Query 474514 TTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATAT 474573
|||||||| || || ||||||| || | |||||||| |||| || || | || ||
Sbjct 1093852 GTTTGATGCCAAGAGGCTGATTGGCCGCAGGTTTGATGACTCCACAGTGCAGGCCGACAT 1093793
Query 474574 GCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT-AGA-AGCAATA 474631
| || ||||| ||||||||| | | || |||||||||| | || ||| | | ||
Sbjct 1093792 GAAGCACTGGCCCTTTAAGGTGGTGAGTGACAGTGGTAAACCTAAGATCAGAGTGGAGTA 1093733
Query 474632 CACGCAGGTGAA-ACTAAACAATTTTCA--CCGGAACAAATTTCTTCAATGGTTTTAGCC 474688
|| | || ||| || | || |||| || || |||| || || |||||| | |
Sbjct 1093732 CAAG--GGAGAAGACAAGAC---CTTCAGCCCAGAGGAAATCTCCTCCATGGTTCTGGTG 1093678
Query 474689 AAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTAC 474747
|| ||||| | || ||| | || || || || | || | | ||||| || ||
Sbjct 1093677 AAGATGAAGGAGGTGGCAGAG-GCCTACCTGGGCCACAAGGTGTCCAACGCAGTGATCAC 1093619
Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807
|| ||||| || || || || || || | || || |||||||| || || |||||
Sbjct 1093618 AGTCCCAGCCTACTTCAACGACTCCCAGAGACAGGCCACTAAAGACGCAGGTGTGATTGC 1093559
Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867
|| || || || | | || || || || || || || ||||| | || || || ||
Sbjct 1093558 CGGACTCAACGTCCTGAGAATCATCAACGAGCCTACGGCCGCCGCTATCGCCTACGGCCT 1093499
Query 474868 TGATAA 474873
|| ||
Sbjct 1093498 GGACAA 1093493
Score = 118 bits (130), Expect = 7e-21
Identities = 361/546 (66%), Gaps = 14/546 (3%)
Strand=Plus/Plus
Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394
|| ||||| | || || || ||| ||||| | || | ||| | || ||||| |||
Sbjct 944327 GGCATTGACCTGGGCACCACATACTCCTGTGTGGGGGTCTTCCAACACGGAAAAGTGGAA 944386
Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454
|| || || |||||||| || || || || || || ||||| |||| || || |||
Sbjct 944387 ATCATCGCTAATGACCAGGGCAACAGGACCACTCCCAGCTATGTGGCTTTCACCGACACT 944446
Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT-AATCCTGTTAATACTAT 474513
|| | || || ||||||||||| || | | || || ||| || || || || |
Sbjct 944447 GAGCGCCTCATCGGAGATGCTGC-CAAGAACCAGGTGGCTCTGAACCCCAACAACACAGT 944505
Query 474514 TTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATAT 474573
|||||||| || || ||||||| || | |||||||| |||| || || | || ||
Sbjct 944506 GTTTGATGCCAAGAGGCTGATTGGCCGCAGGTTTGATGACTCCACAGTGCAGGCCGACAT 944565
Query 474574 GCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT-AGA-AGCAATA 474631
| || ||||| ||||||||| | | || |||||||||| | || ||| | | ||
Sbjct 944566 GAAGCACTGGCCCTTTAAGGTGGTGAGTGACAGTGGTAAACCTAAGATCAGAGTGGAGTA 944625
Query 474632 CACGCAGGTGAA-ACTAAACAATTTTCA--CCGGAACAAATTTCTTCAATGGTTTTAGCC 474688
|| | || ||| || | || |||| || || |||| || || |||||| | |
Sbjct 944626 CAAG--GGAGAAGACAAGAC---CTTCAGCCCAGAGGAAATCTCCTCCATGGTTCTGGTG 944680
Query 474689 AAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTAC 474747
|| ||||| | || ||| | || || || || | || | | ||||| || ||
Sbjct 944681 AAGATGAAGGAGGTGGCAGAG-GCCTACCTGGGCCACAAGGTGTCCAACGCAGTGATCAC 944739
Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807
|| ||||| || || || || || || | || || |||||||| || || || ||
Sbjct 944740 AGTCCCAGCCTACTTCAACGACTCCCAGAGACAGGCCACTAAAGACGCAGGTGTGATCGC 944799
Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867
|| || || ||| | | || || ||||| || || || ||||| | || || || ||
Sbjct 944800 CGGACTCAACGTTCTGAGAATCATCAATGAGCCTACGGCTGCCGCTATCGCCTACGGCCT 944859
Query 474868 TGATAA 474873
|| ||
Sbjct 944860 GGACAA 944865
>seq13501
Length=12216461
Score = 100 bits (110), Expect = 2e-15
Identities = 104/135 (77%), Gaps = 1/135 (1%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
||||||| | ||||| || || || || ||||| || || || || || || |||||||
Sbjct 9383478 ATGCAGTTGTAACTGTCCCTGCCTACTTCAATGACTCCCAGCGCCAGGCGACCAAAGATG 9383537
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| ||| ||||| || |||||||| | |||||||| ||||||||||| ||||| ||
Sbjct 9383538 CTGGAGCTATTGCTGGGCTTAATGTGCTGCGTATTATCAATGAACCAACGGCAGCAGCCA 9383597
Query 474855 TTGCTTATGGTCTTG 474869
|||| ||||| ||||
Sbjct 9383598 TTGCCTATGG-CTTG 9383611
Score = 91.5 bits (100), Expect = 1e-12
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091
||||||||| || | |||||||| || |||| || |||| ||| | || ||
Sbjct 9384609 TGAAGGTGAGAGGGCCATGACTAAAGACAACAACATCCTGGGAAAGTTTGAGCTCACTGG 9384668
Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151
||| || |||||||| ||||| || || || ||||| || || ||||| || ||||| ||
Sbjct 9384669 TATCCCACCTGCTCCAAGAGGTGTCCCCCAGATTGAGGTGACCTTTGACATAGATGCCAA 9384728
Query 476152 TGGTATTCTTAATGT 476166
|||||||||||| ||
Sbjct 9384729 TGGTATTCTTAACGT 9384743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267466287559760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |