Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq3442 143 2e-29
seq10290 104 2e-17
>seq3442
Length=1619139
Score = 143 bits (158), Expect = 2e-29
Identities = 135/172 (78%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374
|| ||||| || ||||||||||| || | |||| |||||| || || ||||| || ||
Sbjct 1245610 AGATCAGTTTCGGGGTTGTCACACTCGGAGCACAGCACAAATTTCCGTATGAACCCGTCG 1245669
Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434
|||| |||||| | ||| || ||||||||||||||||||||| | || |||||||||
Sbjct 1245670 AGCATGTCCTGCAGCTTGTTGGCCTCGTGGGAGCCGTTGACGATGTAGCGGTCGTTTTTG 1245729
Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGT 34486
|||||| ||| || || |||||||| || || || || |||| |||||||
Sbjct 1245730 GAATCGAACTGGGTCTGAGCGCCCAGTTCACAACCAAAAAACTTGGTCGGGT 1245781
>seq10290
Length=4455921
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| |||||||| || | ||||||||||| |||||| | || |||||
Sbjct 2172856 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACTATTACCCTTGAGGTTGAGCCCAGT 2172915
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | || ||| |||||| ||||| |||||| | ||| ||||||
Sbjct 2172916 GACACCATTGAAAACGTGAAAGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAA 2172975
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||||| ||||||| ||| || || ||||| ||||||| | || | | || ||||||
Sbjct 2172976 CAAAGGCTTATTTTTGCTGGCAAGCAGCTTGAGGATGGGCGTACCCTCTCCGACTACAAC 2173035
Query 110453 ATTCAAAAAGAATCTAC 110469
|| || |||||||| ||
Sbjct 2173036 ATCCAGAAAGAATCCAC 2173052
Score = 82.4 bits (90), Expect = 6e-11
Identities = 138/200 (69%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
|| ||||| || ||||| ||||| | || ||||||||||| ||| | || ||||||
Sbjct 2170706 AATATGCAGATCTTTGTGAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTGGAGCCC 2170765
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| || | | | || || |||||| ||||| |||||| | ||| |||
Sbjct 2170766 AGCGACACGATTGAAAATGTTAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGAT 2170825
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || || | || | ||| || || ||||| ||||||| | | || | | || |||
Sbjct 2170826 CAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGACTAC 2170885
Query 110450 AACATTCAAAAAGAATCTAC 110469
||||| || |||||||| ||
Sbjct 2170886 AACATCCAGAAAGAATCCAC 2170905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412757976353660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |