Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq10290 140 2e-28
seq11085 105 5e-18
>seq10290
Length=4455921
Score = 140 bits (154), Expect = 2e-28
Identities = 171/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || |||| |||||| || | ||| || ||||||||||| || ||||| || || |
Sbjct 2170935 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 2170876
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| ||| || || || ||||| ||| | ||||| || |||||||| || |||
Sbjct 2170875 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGA 2170816
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| || || ||||| || ||| || | || ||| |||| | ||||| | || ||
Sbjct 2170815 ATGCCTTCCTTGTCCTG-AATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCAC 2170757
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
||||| || || ||||||||||| | |||||| ||||| |||||||| ||
Sbjct 2170756 CTCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 2170706
Score = 122 bits (134), Expect = 7e-23
Identities = 158/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
||||| || || ||||| ||||||||||| || ||||| || || | | ||| || |
Sbjct 2173070 CGCAGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGCCCA 2173011
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || || ||||||||| | || | ||||| ||||| || ||||| || || |||
Sbjct 2173010 TCCTCAAGCTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGGGGAATGCCTTCCTTG 2172951
Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|| || ||| || | ||| || |||| | |||||| | || || ||||| || ||
Sbjct 2172950 TCCTG-AATCTTAGCTTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAAT 2172892
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||||||| || | ||| || ||||| || |||||
Sbjct 2172891 AGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 2172856
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || |||| |||||| || | ||| || ||||||||||| |||||||| || || |
Sbjct 2171163 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGAC 2171104
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| || ||||| || ||||| ||| | |||| || |||||||| || |||
Sbjct 2171103 AGAGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGA 2171044
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| || || ||||| || ||| || | || ||| | || | ||||| | || ||
Sbjct 2171043 ATGCCTTCCTTGTCCTG-AATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCAC 2170985
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | ||| || || || ||||| | |||||| ||||| ||||||||
Sbjct 2170984 CTCCAAAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2170937
Score = 113 bits (124), Expect = 3e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616
|| || ||||| | ||| || || | |||||| ||||||||||| || ||||| || ||
Sbjct 2173313 TGGCCACCCCTGAGACGAAGAACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCA 2173254
Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676
| | || || || ||||| || || |||||| | ||||| || |||||||| ||
Sbjct 2173253 GACAGAGTACGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGG 2173194
Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736
||||| || || ||||| || | || || || | || | |||||| | ||
Sbjct 2173193 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCC 2173134
Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || ||||| || || || ||||| | |||||| ||||| ||||||||
Sbjct 2173133 ACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2173084
>seq11085
Length=328877
Score = 105 bits (116), Expect = 5e-18
Identities = 164/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|| ||| ||||||| ||||||||||| || |||||||| || || ||||| || || |
Sbjct 148069 TCTTCCTCTCAAACATAGCACCAAATGGAGGGTGGATTCCTTCTGCATGTTGTAGTCTGA 148010
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| ||| || || || || || || |||||| | |||| ||| ||||| || || ||
Sbjct 148009 GAGGGTATGACCGTCTTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGCTGGTCAGGAGG 147950
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|||| | |||||| | || | ||| || ||| |||| | |||||| | ||| ||
Sbjct 147949 AATATCTTCTTTGCCCTGGATCTTTGCCTTAACATTTTCAATGGTGTCACTAGATTCCAC 147890
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTA 29790
| | || || ||||| | || | ||| || ||||| | ||||||||||
Sbjct 147889 CTGCAACGTGAT-GTTTTTTCGGTCAGGGTCTTGACAAAGA-CTGCATTTTA 147840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385141171443420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |