Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq10289 347 9e-90 seq13501 98.7 7e-15 >seq10289 Length=12717785 Score = 347 bits (384), Expect = 9e-90 Identities = 959/1459 (66%), Gaps = 16/1459 (1%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| |||||| ||||| ||||| || || | |||||||| || ||||| || ||||| Sbjct 4424068 GCAGACACATTGAGAATGCCATTAGCGTCGATGTCAAATGTTACCTCAATCTGTGGGACT 4424009 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||||| | || |||||||||||| || | ||| | || || ||||| |||||| Sbjct 4424008 CCTCTTGGGGCTGGTGGGATCCCTGTCAGGTCAAACTTGCCAAGGAGGTTATTGTCTTTA 4423949 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | | |||||| || || | ||||| ||| | | |||||||| || || Sbjct 4423948 GTCATGGCCCTTTCACCTTCAAAGACCTGGATGAGCACTCCCGGCTGATTATCGGAGTAC 4423889 Query 281606 GTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || | || | ||||| ||| ||| || ||||| ||||| | | || | ||| Sbjct 4423888 GTGGAGAAGA-TCTGGGTTTGTTTGGTGGGGATTGTGGTGTTACGTTTGATCAGTGCGGT 4423830 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | ||||| ||||| || | || | ||| || |||| ||||||| || | | Sbjct 4423829 CATTACTCCACCTGCTGTCTCAATGCCCAAAGACAGTGGAGCAACATCAAGCAGAAGGAG 4423770 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 | || | || ||| || | || | || ||||| || || | ||||| ||||| Sbjct 4423769 GTCCTGGACATTCTCAGAGGTGTCCCCCATCAGGATAGCAGCCTGGACCGCAGCTCCATA 4423710 Query 281785 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGA 281844 || || |||||||| || || | ||| || | | | ||||| || || | Sbjct 4423709 GGCCACGGCTTCATCCGGGTTGATGCTTTTGTTCAAGTCCCTTCCATTAAAGAAGTCCTG 4423650 Query 281845 AAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC 281904 || |||| | | || ||||| | | ||||| || || | ||||| || | | Sbjct 4423649 CAGCAGTTTTTGGATTTTGGGAATTCTTGTGGATCCGCCCACCAGGACAATGTCGTTGAT 4423590 Query 281905 CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCT 281964 || ||||| ||||| || | ||| |||| |||| ||||| || || || | || Sbjct 4423589 CTTGGATTTGTCCAGCTTGGCATCTTGTAAAGCTTTCTCAACAGGGTCTAGTGTGCCCCT 4423530 Query 281965 AAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCA 282022 || | |||||| |||||||| ||| |||| ||| || ||| | || || ||| Sbjct 4423529 GAAGAGGTCTGAGTTTAGTTCTTCAAATCGGGCTCGAGT--GATTGAGGTGTAAAAGTCA 4423472 Query 282023 ATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGT 282082 ||||| || | | ||| |||| ||| || | | ||| || || ||||| | | Sbjct 4423471 ATTCCCTCATATAGAGAGTCAATTTCGATGCTTGCTTGGGTGCTGGATGATAGAGTCCTC 4423412 Query 282083 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT--TGCTGATTGATTCAAAT 282140 || || |||||||| ||||| | || || | | ||| | || | ||| | | | Sbjct 4423411 TTGGCGCGTTCACAAGCTGTACGCAGCCTCCTCACCGCTCTCTTGTT--TTGGCTGATGT 4423354 Query 282141 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 282200 || |||| | |||||||| || || |||||| | | || | ||||| ||||| | Sbjct 4423353 CTTTTTTGTGCTTTCTCTTAAACTCATCAACAAAGTGCTTCACCATGCGATTGTCAAAGT 4423294 Query 282201 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 282260 |||| || ||||| | || | ||| | || ||| | || | |||| |||||||||| Sbjct 4423293 CTTCTCCACCCAAGTGTGTGTCTCCAGCTGTGGCTTTCACCTCAAAAATGCCATCTTCAA 4423234 Query 282261 GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 282320 | || || | || ||| || |||||||||| |||||| || || ||||| | Sbjct 4423233 TTGTCAGAATGGATACGTCAAAAGTGCCACCACCCAGATCAAAGATGAGAACATTTCGCT 4423174 Query 282321 CTTTGTCTTGGTTT---TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 282377 | |||| ||| || || |||||||| |||| ||| || |||||||||||||| | Sbjct 4423173 CCCC-TCTT--TTTCCCTTGTCTAGACCATATGCAATAGCTGCTGCAGTTGGTTCATTGA 4423117 Query 282378 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 282437 | ||||||| ||||| | ||||| ||| |||||||||||| |||||||| | || | Sbjct 4423116 TGATTCTCAGGACATTCAAACCAGAAATAACTCCTGCATCTTTTGTGGCTTGGCGCTGGG 4423057 Query 282438 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 | || || ||||| ||||| || || || || |||| | ||| || || | ||| | Sbjct 4423056 AGTCATTGAAATAAGCAGGGACTGTGATGACTGCATTGGACACTCTTTGCCCCAAATACG 4422997 Query 282498 CGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATT 282557 | ||| ||| ||||| ||| |||| |||||| || |||| ||||||| | | Sbjct 4422996 CCTCTGCAATTTCCTTCATCTTAACCAAAACCATTGACGAGATTTCTTCTGGATAGAACG 4422937 Query 282558 GCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTT 282617 ||| | ||| || || |||| | | || || || || | || |||| Sbjct 4422936 CCTTTGTCTCACCTTTGTACTCCACTTGTACTTTGGGCTTGCCACTGTCACTGATCACTT 4422877 Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 282677 | || |||||| ||||| || | || ||| | |||||| ||| | ||| || || | Sbjct 4422876 TGAAAGGCCAAAGCTTCATGTCAGCCTGCACAATAGGGTCATCAAATTTTCTCCCGATGA 4422817 Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737 || || |||||||| || || || | || || | || | || | ||| || || | Sbjct 4422816 GTCTCTTGGCATCAAAGATGGTGTTAGCCGGGTTCATGGCCACCTGGTTTTTAGCAGCGT 4422757 Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797 | ||||| || || || || || || | ||| || || || ||||| || || | Sbjct 4422756 CACCAATTAGCCTCTCGGTGTCAGTGAAGGCAACGTAACTGGGGGTGGTGCGGTTGCCCT 4422697 Query 282798 GATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTG 282857 | ||||| || || || || ||||| |||| || | || || || || | || | Sbjct 4422696 GGTCATTGGCGATGATCTCCACTTTGCCATGCTGGAAAACGCCCACGCAGGAGTAGGTGG 4422637 Query 282858 TTCCTAAATCAATACCAAT 282876 |||| | ||||| ||||| Sbjct 4422636 TTCCCAGGTCAATGCCAAT 4422618 Score = 87.8 bits (96), Expect = 1e-11 Identities = 109/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 86103 TTTTTCACTTC-CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAA 86161 |||||| ||| ||| ||| ||||||| ||||||||||||||||||||| || ||| | | Sbjct 4423167 TTTTTCCCTTGTCTAGACCATATGCAATAGCTGCTGCAGTTGGTTCATTGATGATTCTCA 4423108 Query 86162 GAACATCTAAACCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAA 86221 | |||| ||||| | ||| | | ||| || ||||| | ||| | |||||| | Sbjct 4423107 GGACATTCAAACCAGAAATAACTCCTGCATCTTTTGTGGCTTGGCGCTGGGAGTCATTGA 4423048 Query 86222 AATATGCTGGTACAGTAATAACTGCttt 86249 |||| || || || || || ||||| || Sbjct 4423047 AATAAGCAGGGACTGTGATGACTGCATT 4423020 >seq13501 Length=12216461 Score = 98.7 bits (108), Expect = 7e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440 ||||| || ||||| || || ||| ||| ||| || |||| | ||| |||||| Sbjct 9384794 TTAGTGATGGTAATCTTGTTTTCTTTCCCTGTGCTTTTGTCCACGGCTGACACGTTAAGA 9384735 Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 |||||||||||||| | ||||| || || ||||| || ||||| ||||| |||||||| Sbjct 9384734 ATACCATTGGCATCTATGTCAAAGGTCACCTCAATCTGGGGGACACCTCTTGGAGCAGGT 9384675 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 281547 ||||| || | | ||| ||||||| | || || |||||||| Sbjct 9384674 GGGATACCAGTGAGCTCAAACTTTCCCAGGATGTTGTTGTCTTTAGT 9384628 Score = 95.1 bits (104), Expect = 9e-14 Identities = 110/147 (75%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| || || || ||||||||||| ||||| | || ||| Sbjct 9383619 TTTTTGTCCAAGCCATAGGCAATGGCTGCTGCCGTTGGTTCATTGATAATACGCAGCACA 9383560 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||||||| ||| |||||||| || || || | || || || || || || Sbjct 9383559 TTAAGCCCAGCAATAGCTCCAGCATCTTTGGTCGCCTGGCGCTGGGAGTCATTGAAGTAG 9383500 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 ||||| ||||| | ||| |||| |||| Sbjct 9383499 GCAGGGACAGTTACAACTGCAT-TGTT 9383474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739814428236120