Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq10290 167 5e-36
seq11085 134 3e-26
seq13501 113 9e-20
seq1 111 3e-19
>seq10290
Length=4455921
Score = 167 bits (184), Expect = 5e-36
Identities = 176/232 (76%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| ||||| | ||||| |||||||| ||||| ||||||||||| || || || || |
Sbjct 2173084 TACCACCTCTGAGGCGCAGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGG 2173025
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | || || || || || || |||||||| || || |||||||||||||| |
Sbjct 2173024 AGAGGGTACGCCCATCCTCAAGCTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGGG 2172965
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || |||||||| || |||||||| ||||| || |||||||| || ||| | || || |
Sbjct 2172964 GAATGCCTTCCTTGTCCTGAATCTTAGCTTTCACGTTTTCAATGGTGTCACTGGGCTCAA 2172905
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813
| || | || || || ||||| || | ||||| ||||| || ||||| ||
Sbjct 2172904 CCTCAAGGGTAATAGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCATGAT 2172853
Score = 165 bits (182), Expect = 2e-35
Identities = 174/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| ||||||| |||||| || | || || || ||||||||||| || || || ||||
Sbjct 2171165 TACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAG 2171106
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | |||||||| || || || || ||||| || || || || |||||||| |
Sbjct 2171105 ACAGAGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGG 2171046
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || |||||||| || |||||||| || || ||||| ||||| || || | || || |
Sbjct 2171045 GAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCA 2170986
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| |||||||| || ||||| || || | || || ||||| ||||||||
Sbjct 2170985 CCTCCAAAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2170937
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || || | ||| ||||| | || || || ||||||||||| || || || |||||
Sbjct 2173310 CCACCCCTGAGACGAAGAACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 2173251
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | |||||||| || || |||||||||||||| | || || |||||||| ||
Sbjct 2173250 AGAGTACGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGGGGA 2173191
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| |||||||| || || ||||| || || || || || || || ||| | || || ||
Sbjct 2173190 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 2173131
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| ||| || ||||| || || | || || ||||| ||||||||
Sbjct 2173130 TCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2173084
Score = 147 bits (162), Expect = 4e-30
Identities = 170/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| ||||||| |||||| || | || || || ||||||||||| || || || ||||
Sbjct 2170937 TACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 2170878
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | || || || || || || || |||||||| | || || |||||||| |
Sbjct 2170877 AGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGG 2170818
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || |||||||| || |||||||| || || |||||||||||||| || | || || |
Sbjct 2170817 GAATGCCTTCCTTGTCCTGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCA 2170758
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || | || || || ||||| || | || || ||||| ||||||||
Sbjct 2170757 CCTCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 2170709
>seq11085
Length=328877
Score = 134 bits (148), Expect = 3e-26
Identities = 167/226 (74%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 82586 TCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAG 82645
||||||||||| || || || || || || ||||| ||||| || || || || || ||
Sbjct 148066 TCCTCTCAAACATAGCACCAAATGGAGGGTGGATTCCTTCTGCATGTTGTAGTCTGAGAG 148007
Query 82646 AATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTAT 82705
| ||||||||| || || || |||||||| || ||||| || || || ||||| ||
Sbjct 148006 GGTATGACCGTCTTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGAAT 147947
Query 82706 TCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTC 82765
|||| || | || |||||||| || ||||||||||| || ||| ||| ||| || |
Sbjct 147946 ATCTTCTTTGCCCTGGATCTTTGCCTTAACATTTTCAATGGTGTCACTAGATTCCACCTG 147887
Query 82766 CAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||| || || || || | |||| ||||| ||||| | |||||||
Sbjct 147886 CAACGTGAT-GTTTTTTCGGTCAGGGTCTTGACAAAGA-CTGCATT 147843
>seq13501
Length=12216461
Score = 113 bits (124), Expect = 9e-20
Identities = 122/162 (75%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 60148 AGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCAT 60207
||| || |||||||||| | | || |||||||| |||||| | || || |||||||||||
Sbjct 6011652 AGCCTTGTGGTGGTACTTTGTCTCCAAAGGTATTGAATACCTGGACACAGTGTTTTTCAT 6011593
Query 60208 ACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTT 60267
|| ||||||||||| || ||||| | || || || || || || || | || |||||
Sbjct 6011592 TCTGAGGAAAAAGTTCAACCAGGTGACCTTCTTGCATGTGTACCACCACTGCACCATGTT 6011533
Query 60268 TACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309
||| | | ||| | ||||| |||||| | || ||||| ||
Sbjct 6011532 CACTCTGTGGTGGATTGGCATCAAATGGGTGGCAGGAGGACA 6011491
>seq1
Length=17765049
Score = 111 bits (122), Expect = 3e-19
Identities = 127/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198
|||||| ||| | ||||||||||| || |||||||| | || | || || || ||
Sbjct 7548992 GATAGCATCAGCTCTTTGGTGGTACTACATCTCTAAAGGAGTGGAGTTTTTGGACACTGT 7548933
Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258
|||||||| | ||||||||||| || || || |||||||||||||| || ||||| |
Sbjct 7548932 ATTTTTCATTTTGAGGAAAAAGTTCAACCAAGTCAGTTTTTTACACGTCTACCATCACTG 7548873
Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309
|| ||||| | || | ||| | ||||| |||||| | ||||||| ||
Sbjct 7548872 CACCATGTTCATCTTGTGGTGGATTGGCATCAAATGGGTCCCCGGAGGACA 7548822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981618126034180
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |