Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq10290 167 5e-36 seq11085 134 3e-26 seq13501 113 9e-20 seq1 111 3e-19 >seq10290 Length=4455921 Score = 167 bits (184), Expect = 5e-36 Identities = 176/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | ||||| |||||||| ||||| ||||||||||| || || || || | Sbjct 2173084 TACCACCTCTGAGGCGCAGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGG 2173025 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || || || || |||||||| || || |||||||||||||| | Sbjct 2173024 AGAGGGTACGCCCATCCTCAAGCTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGGG 2172965 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || |||||||| ||||| || |||||||| || ||| | || || | Sbjct 2172964 GAATGCCTTCCTTGTCCTGAATCTTAGCTTTCACGTTTTCAATGGTGTCACTGGGCTCAA 2172905 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 | || | || || || ||||| || | ||||| ||||| || ||||| || Sbjct 2172904 CCTCAAGGGTAATAGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCATGAT 2172853 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||||| |||||| || | || || || ||||||||||| || || || |||| Sbjct 2171165 TACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAG 2171106 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | |||||||| || || || || ||||| || || || || |||||||| | Sbjct 2171105 ACAGAGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGG 2171046 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || |||||||| || || ||||| ||||| || || | || || | Sbjct 2171045 GAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCA 2170986 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || ||||| || || | || || ||||| |||||||| Sbjct 2170985 CCTCCAAAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2170937 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| ||||| | || || || ||||||||||| || || || ||||| Sbjct 2173310 CCACCCCTGAGACGAAGAACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 2173251 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | |||||||| || || |||||||||||||| | || || |||||||| || Sbjct 2173250 AGAGTACGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGGGGA 2173191 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || || || || || || ||| | || || || Sbjct 2173190 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 2173131 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| || ||||| || || | || || ||||| |||||||| Sbjct 2173130 TCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2173084 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||||| |||||| || | || || || ||||||||||| || || || |||| Sbjct 2170937 TACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 2170878 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || || || || || |||||||| | || || |||||||| | Sbjct 2170877 AGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGG 2170818 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || |||||||| || || |||||||||||||| || | || || | Sbjct 2170817 GAATGCCTTCCTTGTCCTGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCA 2170758 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || || ||||| || | || || ||||| |||||||| Sbjct 2170757 CCTCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 2170709 >seq11085 Length=328877 Score = 134 bits (148), Expect = 3e-26 Identities = 167/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 82586 TCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAG 82645 ||||||||||| || || || || || || ||||| ||||| || || || || || || Sbjct 148066 TCCTCTCAAACATAGCACCAAATGGAGGGTGGATTCCTTCTGCATGTTGTAGTCTGAGAG 148007 Query 82646 AATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTAT 82705 | ||||||||| || || || |||||||| || ||||| || || || ||||| || Sbjct 148006 GGTATGACCGTCTTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGAAT 147947 Query 82706 TCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTC 82765 |||| || | || |||||||| || ||||||||||| || ||| ||| ||| || | Sbjct 147946 ATCTTCTTTGCCCTGGATCTTTGCCTTAACATTTTCAATGGTGTCACTAGATTCCACCTG 147887 Query 82766 CAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| || || || || | |||| ||||| ||||| | ||||||| Sbjct 147886 CAACGTGAT-GTTTTTTCGGTCAGGGTCTTGACAAAGA-CTGCATT 147843 >seq13501 Length=12216461 Score = 113 bits (124), Expect = 9e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 60148 AGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCAT 60207 ||| || |||||||||| | | || |||||||| |||||| | || || ||||||||||| Sbjct 6011652 AGCCTTGTGGTGGTACTTTGTCTCCAAAGGTATTGAATACCTGGACACAGTGTTTTTCAT 6011593 Query 60208 ACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTT 60267 || ||||||||||| || ||||| | || || || || || || || | || ||||| Sbjct 6011592 TCTGAGGAAAAAGTTCAACCAGGTGACCTTCTTGCATGTGTACCACCACTGCACCATGTT 6011533 Query 60268 TACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 ||| | | ||| | ||||| |||||| | || ||||| || Sbjct 6011532 CACTCTGTGGTGGATTGGCATCAAATGGGTGGCAGGAGGACA 6011491 >seq1 Length=17765049 Score = 111 bits (122), Expect = 3e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||| ||| | ||||||||||| || |||||||| | || | || || || || Sbjct 7548992 GATAGCATCAGCTCTTTGGTGGTACTACATCTCTAAAGGAGTGGAGTTTTTGGACACTGT 7548933 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 |||||||| | ||||||||||| || || || |||||||||||||| || ||||| | Sbjct 7548932 ATTTTTCATTTTGAGGAAAAAGTTCAACCAAGTCAGTTTTTTACACGTCTACCATCACTG 7548873 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 || ||||| | || | ||| | ||||| |||||| | ||||||| || Sbjct 7548872 CACCATGTTCATCTTGTGGTGGATTGGCATCAAATGGGTCCCCGGAGGACA 7548822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981618126034180