Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq10290 134 9e-27 >seq10290 Length=4455921 Score = 134 bits (148), Expect = 9e-27 Identities = 173/235 (74%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | || | ||| || ||| ||||| || |||||||| || || Sbjct 2170936 ACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 2170877 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || || | || || |||||||| ||||| | |||||||||| | || Sbjct 2170876 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGG 2170817 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || | | ||||| || | |||||||| | |||| Sbjct 2170816 AATGCCTTCCTTGTCCTGAATCTT-GGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCA 2170758 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755 | |||| ||||| ||||| || || | ||||| ||||||||||||||| |||| Sbjct 2170757 CCTCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATA-TTGG 2170704 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | || | ||| || ||| ||||| || |||||||| || || Sbjct 2171164 ACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGA 2171105 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| || | || || ||||||||||||| | |||||||||| | || Sbjct 2171104 CAGAGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGGG 2171045 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || ||| |||| || | ||||||||| | |||| Sbjct 2171044 AATGCCTTCCTTGTCCTGAATCTTGGCCTTC-ACATTCTCAATGGTGTCGCTGGGCTCCA 2170986 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | ||||| ||||||||||||||| Sbjct 2170985 CCTCCAAAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCATA 2170936 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | || | ||| || ||| ||| ||||| || ||||| |||||| Sbjct 2171391 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATATTGTAGTCGGAG 2171332 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || || |||||||| ||||| | |||||||||| | || Sbjct 2171331 AGGGTGCGCCCATCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGA 2171272 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| | | || | |||||| || | ||||| Sbjct 2171271 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTTCTCGATGGTGTCACTGGGCTCCAC 2171213 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | ||||| ||||||||||||||| Sbjct 2171212 CTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCATA 2171164 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | || | ||| || ||| ||||| || |||||||| || || Sbjct 2173310 CCACCCCTGAGACGAAGAACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 2173251 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || ||||| ||||| ||||| | |||||||||| | || Sbjct 2173250 AGAGTACGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGGGGA 2173191 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| | | || | |||||| || | ||||| Sbjct 2173190 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTTCTCGATGGTGTCACTGGGCTCCAC 2173132 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | ||||| ||||||||||||||| Sbjct 2173131 CTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCATA 2173083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328637418950400