Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq9898 109 5e-19 seq10290 91.5 1e-13 >seq9898 Length=4754808 Score = 109 bits (120), Expect = 5e-19 Identities = 434/672 (65%), Gaps = 17/672 (3%) Strand=Plus/Minus Query 146938 TTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTA 146997 ||||| ||| | | || | |||||||| ||||||| |||||| || |||| || ||| Sbjct 101267 TTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCTAGTATTTGTGCTGTGGAAGCAGTA 101208 Query 146998 GGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA- 147056 |||||| |||| ||||| || | || ||| | | || || ||||| | Sbjct 101207 GGCATGGGGGCCAACAACAGGCTGTTCCTCACACCATGTTTAGTAATCTTCTCCTTAAGC 101148 Query 147057 AGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCC 147116 || || ||||||||| | || | ||| | | |||||||||||| || || | || Sbjct 101147 AGCTT-CCAGTCCCAGAGCGCAGTCGGCACCTTCTCCCACATGTCGTATTGCAGAATGCC 101089 Query 147117 TCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACA 147176 ||| | ||| || | | | || || ||||| | || || || || Sbjct 101088 CTTACTCACTGGAGAACCTGGGTATGTCTCATAAGGCCCGTCTTTTTCTGCTAACTCGCA 101029 Query 147177 GCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGC 147236 ||||||||| || || | |||||||| || || ||| || |||| || | || Sbjct 101028 GCTTGCCTCCAGGGCGGCGTAGTATATTGTCTCAAAGATCTGGATGTTCAGCAGCTGGGC 100969 Query 147237 TTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACC 147296 ||| || || | || ||||| || | |||||||| || | |||||| | || Sbjct 100968 TTCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACTCC 100909 Query 147297 GACGCCGATAGGTCGATG---CTT-TTCGT-TGCTGCGCTTCGCGCTCGCTATGGGATAG 147351 | ||||| || | || ||| |||| | || ||||| | | |||| ||| Sbjct 100908 AATTCCGATTGGCCTGTGGCGCTTGTTCGAGTTCTCGGCTTCAGGGAC----TGGG-TAG 100854 Query 147352 TGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGT 147411 | ||| ||||| |||||||||||||| | || | |||||||| | | || Sbjct 100853 TAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACAGAGGCAAGC 100794 Query 147412 TTCTCGAAATCATAAGTCCCGTCT-TCGACACGTACGCATTGGTTCACGGCGATAGACGC 147470 || | ||| ||| | |||| ||| | || || ||| ||| | || ||||| || Sbjct 100793 TTTTTGAAGTCAAAGGTCCGTTCTGGAGTAACATA--CAT--GTTAAGAGCAATAGAAGC 100738 Query 147471 CAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTT 147530 || || |||||||| ||| || | | |||| ||| || || | ||||| ||| Sbjct 100737 CAAGTTACAGACGGCTACCTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAGTT 100678 Query 147531 GCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAA 147590 |||||||| || |||||||| |||||||| || |||| || || || |||||| | Sbjct 100677 ACTGCATTTGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCATCTTTGTA 100618 Query 147591 GAGCATGTACGG 147602 | |||||| || Sbjct 100617 CAACATGTAAGG 100606 >seq10290 Length=4455921 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | || ||||| |||||||||||||| || || || Sbjct 2171151 CGCAGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCG 2171092 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||||||||| || |||| | | || || | ||| |||||||| || |||||||| || Sbjct 2171091 TCTTCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 2171032 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || |||| | || | || ||| | |||||||| || | || | Sbjct 2171031 TCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAAGTGATG 2170972 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || ||||| | || |||||||| Sbjct 2170971 GTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2170937 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | || ||||| || ||||||||||| | ||| || | Sbjct 2170923 CGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA 2170864 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| | |||| | | ||| |||||||| || |||||||| || Sbjct 2170863 TCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTG 2170804 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || || | | ||| | || ||| | |||||||| || | || | Sbjct 2170803 TCCTGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCACCTCAAGGGTGATG 2170744 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || ||||| | || |||||||| Sbjct 2170743 GTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 2170709 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| || |||||||||||| | ||||||| ||| || ||||| || || | | Sbjct 2173049 GATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGCCCATCCTCAAGCTGCTTGCCAGCA 2172990 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | ||||||||||| || |||||||| || || ||| || ||||| Sbjct 2172989 AAAATAAGCCTTTGTTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTTAGCTTTCACG 2172930 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | ||||| || || | || | ||||| || || || || || Sbjct 2172929 TTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATAGTTTTGCCGGTGAGGGTCTTG 2172870 Query 132110 ATGAAAATCTGCATGA 132125 | || || ||||||| Sbjct 2172869 ACAAAGATTTGCATGA 2172854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476512184023200