Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq1555 104 7e-19
seq10619 100 9e-18
seq10289 100 9e-18
seq13279 98.7 3e-17
seq11935 98.7 3e-17
seq8213 98.7 3e-17
seq7767 98.7 3e-17
>seq1555
Length=1860585
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1508016 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1507957
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1507956 CCGGGTTTCGGC 1507945
Score = 100 bits (110), Expect = 9e-18
Identities = 63/68 (93%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1356056 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1355997
Query 2829 CCGGGCTT 2836
||||| ||
Sbjct 1355996 CCGGGTTT 1355989
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| ||||||||||||||| |||||||||||||||| |
Sbjct 1516084 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 1516025
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1516024 CCGGGTTTCGGC 1516013
Score = 96.9 bits (106), Expect = 1e-16
Identities = 62/68 (91%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1510208 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAGTC 1510149
Query 2829 CCGGGCTT 2836
||||| ||
Sbjct 1510148 CCGGGTTT 1510141
Score = 82.4 bits (90), Expect = 2e-12
Identities = 51/55 (93%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1536016 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCGGGTT 1535962
Score = 78.8 bits (86), Expect = 3e-11
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Minus
Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823
|||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1520242 TAGCTCAGTTGGGAGAGCGTTAGACTGAACATCTAAAGGTCCCTGGTT 1520195
>seq10619
Length=4378827
Score = 100 bits (110), Expect = 9e-18
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1672357 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 1672416
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 1672417 CCCGGGTTTCGGC 1672429
Score = 100 bits (110), Expect = 9e-18
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1710679 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 1710738
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 1710739 CCCGGGTTTCGGC 1710751
>seq10289
Length=12717785
Score = 100 bits (110), Expect = 9e-18
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 2780647 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 2780706
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 2780707 CCCGGGTTTCGGC 2780719
>seq13279
Length=2863725
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 729309 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 729250
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 729249 CCGGGTTTCGGC 729238
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 737707 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 737648
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 737647 CCGGGTTTCGGC 737636
>seq11935
Length=3744941
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1224625 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1224566
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1224565 CCGGGTTTCGGC 1224554
>seq8213
Length=7130527
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct 456278 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGACCCTGGTTCAATC 456337
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 456338 CCGGGTTTCGGC 456349
Score = 98.7 bits (108), Expect = 3e-17
Identities = 63/69 (91%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831
||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 459246 GAAATAGATCAGTTGGGAGAGAGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCA 459305
Query 2832 GGCTTCAGC 2840
|| ||||||
Sbjct 459306 GGTTTCAGC 459314
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct 2501502 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGACCCTGGTTCAATC 2501443
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2501442 CCGGGTTTCGGC 2501431
Score = 91.5 bits (100), Expect = 5e-15
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |
Sbjct 340986 GCTGAAACAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGATCCCTGGTTCAGTC 340927
Query 2829 CCGGGCTT 2836
||||| ||
Sbjct 340926 CCGGGTTT 340919
>seq7767
Length=11542515
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 6123303 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 6123244
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 6123243 CCGGGTTTCGGC 6123232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15846718839900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |