Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq9898 623 1e-173 seq11714 140 4e-28 seq11381 123 3e-23 >seq9898 Length=4754808 Score = 623 bits (690), Expect = 1e-173 Identities = 1321/1954 (68%), Gaps = 23/1954 (1%) Strand=Plus/Minus Query 68651 TATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGAT 68710 ||||||| || || |||||||||| | | || || | | | || ||||| || | Sbjct 101371 TATTCTTCATTTCCTCATTCCACAGTCCCCGTTCAGTCAGGTCCTTGAGCAGATGTGGGT 101312 Query 68711 TAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTT 68770 | || || ||||| || || || | ||||| || ||||| || || ||||| || | || Sbjct 101311 TTACAATCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGCTT 101252 Query 68771 CCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCA 68830 | | || ||||| || || || ||||| || || || ||||| ||||| || |||| || Sbjct 101251 CGATGGACTCATTGTTGCCTAGTATTTGTGCTGTGGAAGCAGTAGGCATGGGGGCCAACA 101192 Query 68831 ATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAA 68890 | | || || || | ||||||| | | || || || || || | ||||| ||||| | Sbjct 101191 ACAGGCTGTTCCTCACACCATGTTTAGTAATCTTCTCCTTAAGCAGCTTCCAGTCCCAGA 101132 Query 68891 GATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATC 68950 | ||| || || | ||| | |||||||| ||||| || ||||| | || | Sbjct 101131 GCGCAGTCGGCACCTTCTCCCACATGTCGTATTGCAGAATGCCCTTACTCACTGGAGAAC 101072 Query 68951 CATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCAC 69010 | ||||| |||||||| || || | ||| |||| || || |||||||| | || Sbjct 101071 CTGGGTATGTCTCATAAGGCCCGTCTTTTTCTGCTAACTCGCAGCTTGCCTCCAGGGCGG 101012 Query 69011 CGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATG 69070 |||| || ||||| || || |||| | || || || ||||| |||| || |||| Sbjct 101011 CGTAGTATATTGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCTTCAGGACTTTCAAATG 100952 Query 69071 GATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTAT 69130 ||||| | | ||||| || |||||||| | ||||| || ||||| ||||| || || | Sbjct 100951 GATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACTCCAATTCCGATTGGCCTGT 100892 Query 69131 GTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 69190 | | ||| || || | || ||||| || | || || || ||||| || || || || | Sbjct 100891 GGCGCTTGTTCGAGTTCTCGGCTTCAGGGACTGGGTAGTAGTTAATGTCAATGATCTTGT 100832 Query 69191 TAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCAT 69250 | || |||| || | ||||||| || || || || ||||| |||| | Sbjct 100831 TGAGGTTTCTTACAATTACTTTAGTGACAGAGGCAAGCTTTTTGAAGTCAAAG-GTCCGT 100773 Query 69251 -CTA---TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTA 69306 || ||||| |||| || || || | ||| || | ||||| || |||||||||| Sbjct 100772 TCTGGAGTAACATACATGTTAAGAGCAATAGAAGCCAAGTTACAGACGGCTACCTCATCT 100713 Query 69307 GAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTT 69366 ||| ||| | | ||||| || || | ||||| ||||||||||| |||| ||| Sbjct 100712 TTGCTTGTATACTCCACAATCTCAGTGCACAAGTTACTGCATTTGATAGTGCCCAAATTC 100653 Query 69367 TGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCA 69426 |||||||||||||| |||||||||| || ||||| | || | ||||| || |||||| Sbjct 100652 TGCTGATTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGAGTTCCTGTTTCA 100593 Query 69427 ATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGC 69486 ||||||| || || || | | ||| || | ||| || | || | | | || | Sbjct 100592 GTCTGAGACTCTATGATGGCATACCACACCTGCTGAGCCTTGACCACC--CGTTTCACTC 100535 Query 69487 TTC--TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCA 69544 | | || | || || | || || ||| || || || || |||||| ||||||| Sbjct 100534 TGCCTTCCTGCTCGTAGCGAGTGTACAGCTTCTCAAACTCCTCCCCCCAACACTCATCCA 100475 Query 69545 ATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCA 69604 ||||| || ||| | || |||||||| ||||| | | | | | || | |||| Sbjct 100474 GCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTGGTTGTTTTCCACCCTCTTCA 100415 Query 69605 TAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTT 69663 | || | ||| || ||||| || || ||| ||||| |||| | || | || || || Sbjct 100414 TGAACAAATCAGGGATCCATAGGGC-ATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTA 100356 Query 69664 CCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 69723 || || || || || | || || || || | | ||| | |||||||| || || || Sbjct 100355 CCAGTGTTCTTCTTTAACTCAAGGAAGTCAAACACGTCAAAGTGCCATGGCTCAAGGTAC 100296 Query 69724 ATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTA 69783 || || | | | || ||||||||||| || || || || | ||| | || ||||| || Sbjct 100295 ATGGCAAAGGCACCAGGTCGTTTATTGCCACCTTGGTCCACGTAGCGCGCCGTGTTGTTG 100236 Query 69784 TAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTT 69843 || || |||||||| || | || ||||| || |||||||||||||||| ||| || ||| Sbjct 100235 TACACCCTCAGCATTGGCACAAGGCCATTTGAATTACCATTTGTTCCAGCAATGTAGCTT 100176 Query 69844 CCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGA 69903 ||| ||| | ||| |||| | || ||| || |||||||| ||| ||||| ||| Sbjct 100175 CCTGTTGATCTAATGCAGCTAACTGCTACACCAATCCCTCCTGCAGATTTGGAGATGAGA 100116 Query 69904 GCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGA 69963 || || |||| | ||| ||||| || || || ||||| ||||| ||||| || || Sbjct 100115 GCGCATTGTTTGAGTGTATCATAAATGCCATCAATGCTGTCATCCTTCATGGCCAGCAGG 100056 Query 69964 AAACAGCTAGACATTTGATGATGT-ATAGTTCCCGCATTAAATAATGTAGGAGATGCGTG 70022 || || ||||| | || || | | | || || ||||| || | || ||||| || || Sbjct 100055 AAGCAACTAGAGAGCTG-TGGTCTGTTGGTGCCTGCATTGAACAGAGTGGGAGAGGCATG 99997 Query 70023 AGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTG 70082 ||||||||| || ||||| ||||| ||||| || ||||| |||| || ||||| | Sbjct 99996 AGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCTGCATCAATATCAGTTTT 99937 Query 70083 ATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATT 70142 || ||||| | || || | ||| | ||| ||||| || || || || || ||| Sbjct 99936 GTGGATTCCAACAGCTACTCTCATGAGCATGTGCTGTGGACGCTCAGCCACCTTGCCATT 99877 Query 70143 TATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202 ||||||| |||||| || || || || ||||| ||||| | || || ||||| || Sbjct 99876 GATTTTCAGCAGGTAGGAGCGCTCTAGGGTCTTAAAGCCAAAGAAATTATAAGAAAAATC 99817 Query 70203 TCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTA--ACTATATCCA-T 70259 || || || || ||| |||| || || || | | |||| | || ||||| | Sbjct 99816 CCTATCATAGATTATAGCAGAGTTGAGGCGGTC--TTTGTTTGCAAGGACAATATCTAGG 99759 Query 70260 AACAGTAGGTGAGATAATCGGAGATCGTTTACCATTTTT--AGGATTAACATAGTTGAAT 70317 | | || ||||| || || || || | | ||| ||| || ||||||||||| Sbjct 99758 GTCTCTTGG-GAGATCATGGGGGA--GTGGCGCTTGTTTAAAGGGTTGACATAGTTGAAC 99702 Query 70318 AAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCT 70377 | ||| ||||| || ||||| || | || || || || || || | || || | || Sbjct 99701 AGATCCTCCATGACGTCACTGAACACCTTCTTGGTCTCTTTATGGAGGTTGGAAACAGCA 99642 Query 70378 ATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCC 70437 || | || || |||| ||||| || || || | || || || || || || ||| Sbjct 99641 ATGCGTGCAGCCAGAAGGGCATAATCGGGGTGCTTAGTGGTTAGTGTGGCAGCAATCTCC 99582 Query 70438 GCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTC 70497 ||||| | || || || || | ||| || ||||| | || || ||||| || || ||| Sbjct 99581 GCAGCGAGTGTGTCCAACTCCACAGTGGTCACTCCACTGTACAGACCTTGGATCACCTTC 99522 Query 70498 ATGGCTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCTAATA 70557 || | |||| || || | || || | ||| || || ||||| | ||| || Sbjct 99521 ATTGTGATTTGTGCGGGGTCCACAAACTCCGCGTTGAGCCCGTAACAGAGCTTTTGGATT 99462 Query 70558 CGAGATGTAATTTTATCAAACATAACATTCTCCT 70591 ||||| || |||||||||||||| || ||||| Sbjct 99461 CGAGAGGTGATTTTATCAAACATGACGCGCTCCT 99428 Score = 93.3 bits (102), Expect = 6e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || || || ||||| || || | |||| ||| |||| || || |||||||||| Sbjct 101662 TCCAGCCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 101603 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || || || || ||| | || || | ||||| ||||| || | ||| ||| Sbjct 101602 TTAGAGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTGAGTATAGTCT 101543 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 | || | |||||||||| || ||| | | |||||| | ||||||||| Sbjct 101542 TCTGTGATATTTCCCAAACTGTTTTATACAGCTGTTTTAAATCATCTGG 101494 >seq11714 Length=3826745 Score = 140 bits (154), Expect = 4e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || ||| ||||| |||||||||||| || || |||||||||||||||| ||||| || Sbjct 1501515 GAGCCAGCATATGATTCATAAGGTCCATCATGGGCAGCTAGTTCACAACTGGCCTCCAAA 1501574 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||| | ||||| || || || ||||||| | ||||||| || |||||| ||| || Sbjct 1501575 GCAGCATAATATATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCTTCTTCACTTTCA 1501634 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 ||||||||| | | ||||| || || ||||| | |||||||| || || || |||||| Sbjct 1501635 AATGGATAACGCATGAGAATGAAGGCGTCTGCAAGACCCTGAACACCGATTCCAATAGGT 1501694 Query 69127 CTATG 69131 || || Sbjct 1501695 CTGTG 1501699 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| ||||| ||||| |||||| ||| |||| || || || ||||| | Sbjct 1500384 TCCACCCATAGAAGTGCATGCTTGTGAGTTTGCCATAGTTTGGTTCAGCAATGTGAATGT 1500443 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| ||||| || || || ||| | || || | || |||||||| || | | | | Sbjct 1500444 TCAGAGATTGGCTCTGGTCAATGTAGGCACCACGGTCAGCCGCCATCTTGAGGACCATTT 1500503 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGC 68614 | |||| |||||||| | ||| || ||| ||| || | ||||||||||| || Sbjct 1500504 TCTGAGAGATTTCCCACACAGTTTTGTAAAGCTGCTTTAGATCATCTGGAATGC 1500557 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | |||||| || |||||||| |||||||| || || ||||| ||| Sbjct 1503114 GTGCCAGCATTGAACAGTGTAGGGGAGGCGTGAGTAAACCATTTCTCTGAGAGCAGGTTG 1503173 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || || ||||| |||| || | ||| | |||||| || | || || | ||| | | Sbjct 1503174 TAGGTCTCAATGGCTGCGTCCACATCTTGTTTATGAATCCCAACAGCCACTCTCATGAGC 1503233 Query 70111 ATATGCTGAGG 70121 ||||||||||| Sbjct 1503234 ATATGCTGAGG 1503244 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 ||||| ||||| || | ||| || ||||||||||| || ||||| || || || | ||| Sbjct 1500825 TGAAACTCCCCTGAAAGCACCCTGCGAGTGTAAATGTTGCTGGTGTAAGGCTCAATGGAT 1500884 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCA 68827 ||||| || || || || || ||||| || || || |||||||| |||| Sbjct 1500885 TCATTGTTGCCAAGGATCTGGGCAGTGGAGGCTGTGGGCATAGGGGCCA 1500933 >seq11381 Length=12543884 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || ||| | || || || ||||||||||| | ||||| Sbjct 9286990 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGACCGGGCATTAGACCCCTCTTTT 9286931 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||| | ||||| ||||| |||||||| ||||| || || ||||| |||||||||| Sbjct 9286930 TCAGCCAATAAATGGCCGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATG 9286871 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| ||| || || Sbjct 9286870 CCACAATTCTTTCACC 9286855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686766094696800