Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq15300 84.2 2e-11
seq11381 84.2 2e-11
seq9943 82.4 6e-11
seq5720 82.4 6e-11
>seq15300
Length=108242
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 77318 ACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGACAACTGAC 77377
|||| ||||||| | |||||||||||||| || || ||||| || ||||||| | |
Sbjct 100699 ACCTGCAGCTCCGAGTTGAGTTGGTCCAGTTTGATGAAGTCGTCTTTGTTGATGATTTCT 100640
Query 77378 CCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACC 77436
||||| | ||| ||||||||||| | |||||| |||| ||||| | ||||| ||
Sbjct 100639 CCTCCAGATTTCAGTCTCCAGCCGTTTAGTTTCCAGGTCTTCACCCAACTGGTCACGCC 100581
>seq11381
Length=12543884
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175
|| ||| || ||| || |||| || ||||||| ||| || || |||||||| || |||||
Sbjct 9286848 TTTTTTAGGTGAAAGAATTGTGGCATTTGCAGCTGTAGAGGGAATTTTCTTCTCTGGATC 9286907
Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235
||||||||||| | |||| | || || | ||| | ||||| || | || | ||| ||
Sbjct 9286908 CTTTGCGGCCATTTATTGGCTGAAAAAGAGGGGTCTAATGCCCGGTCTTACTTATTCCAA 9286967
Query 44236 TGAGTTAATAAGTCGTGATGA 44256
||| | || || | |||||
Sbjct 9286968 TGAACTTATCAGCAGAGATGA 9286988
>seq9943
Length=499256
Score = 82.4 bits (90), Expect = 6e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554
||||||||||| || ||||| || ||||| |||| || || || ||||| ||||| ||
Sbjct 293428 AACCCGTTTGACTTCATGGAGAACATTTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAG 293487
Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587
| || ||||| |||||| | ||||||||||||
Sbjct 293488 AGAGTGGGAGAGTATCAGAGGATGGGCGTCATG 293520
>seq5720
Length=225
Score = 82.4 bits (90), Expect = 6e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554
||||||||||| || ||||| || ||||| |||| || || || ||||| ||||| ||
Sbjct 38 AACCCGTTTGACTTCATGGAGAACATTTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAG 97
Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587
| || ||||| |||||| | ||||||||||||
Sbjct 98 AGAGTGGGAGAGTATCAGAGGATGGGCGTCATG 130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397375492803100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |