Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq15300 84.2 2e-11 seq11381 84.2 2e-11 seq9943 82.4 6e-11 seq5720 82.4 6e-11 >seq15300 Length=108242 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 77318 ACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGACAACTGAC 77377 |||| ||||||| | |||||||||||||| || || ||||| || ||||||| | | Sbjct 100699 ACCTGCAGCTCCGAGTTGAGTTGGTCCAGTTTGATGAAGTCGTCTTTGTTGATGATTTCT 100640 Query 77378 CCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACC 77436 ||||| | ||| ||||||||||| | |||||| |||| ||||| | ||||| || Sbjct 100639 CCTCCAGATTTCAGTCTCCAGCCGTTTAGTTTCCAGGTCTTCACCCAACTGGTCACGCC 100581 >seq11381 Length=12543884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 || ||| || ||| || |||| || ||||||| ||| || || |||||||| || ||||| Sbjct 9286848 TTTTTTAGGTGAAAGAATTGTGGCATTTGCAGCTGTAGAGGGAATTTTCTTCTCTGGATC 9286907 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 ||||||||||| | |||| | || || | ||| | ||||| || | || | ||| || Sbjct 9286908 CTTTGCGGCCATTTATTGGCTGAAAAAGAGGGGTCTAATGCCCGGTCTTACTTATTCCAA 9286967 Query 44236 TGAGTTAATAAGTCGTGATGA 44256 ||| | || || | ||||| Sbjct 9286968 TGAACTTATCAGCAGAGATGA 9286988 >seq9943 Length=499256 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 ||||||||||| || ||||| || ||||| |||| || || || ||||| ||||| || Sbjct 293428 AACCCGTTTGACTTCATGGAGAACATTTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAG 293487 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | || ||||| |||||| | |||||||||||| Sbjct 293488 AGAGTGGGAGAGTATCAGAGGATGGGCGTCATG 293520 >seq5720 Length=225 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 ||||||||||| || ||||| || ||||| |||| || || || ||||| ||||| || Sbjct 38 AACCCGTTTGACTTCATGGAGAACATTTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAG 97 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | || ||||| |||||| | |||||||||||| Sbjct 98 AGAGTGGGAGAGTATCAGAGGATGGGCGTCATG 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397375492803100