Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq11714 95.1 2e-14 seq11381 86.0 8e-12 >seq11714 Length=3826745 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/144 (75%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 111277 TGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTC---TTAATCGTCCCCAAATTCTT 111333 |||||| |||| ||| || || || | ||| ||| || || || || ||||||| Sbjct 1502033 TGTGTATTCTACAATCTCAGTGCACAGGTT---ACTGGATTTGATGGTGCCTAAATTCTG 1502089 Query 111334 TTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGT 111393 |||||||||||| | || || ||||| |||||||||||||| || ||||| ||||| || Sbjct 1502090 CTGGTTACTCTTCCTATTACATGCATCTTTGTAGAGCATGTACGGTGTCCCTGTCTCTGT 1502149 Query 111394 CTGTGATTTGAGAATAGCCTTCCA 111417 |||||| | | ||| || | ||| Sbjct 1502150 CTGTGACTCAATAATGGCATACCA 1502173 >seq11381 Length=12543884 Score = 86.0 bits (94), Expect = 8e-12 Identities = 96/123 (78%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTG-AGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||||||| | ||||||||||| | | ||| | ||||| ||||| ||||||| ||| Sbjct 9286990 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTA-AGACCGGGCATTAGACCCCTCTTT 9286932 Query 122737 TTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 122795 |||| ||||||||| | |||| || || || |||||||| || ||||| ||| ||||| Sbjct 9286931 TTCAGCCAATAAATGGCCGCA-AAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAA 9286873 Query 122796 CGC 122798 || Sbjct 9286872 TGC 9286870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627901526352000