Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq9898 120 4e-22 seq9943 100 4e-16 seq11714 89.7 6e-13 >seq9898 Length=4754808 Score = 120 bits (132), Expect = 4e-22 Identities = 455/702 (65%), Gaps = 19/702 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | || | | |||||||||| || | ||||| |||||||| Sbjct 101273 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCTAGTATTTGTGCTGTGGAA 101214 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || || |||||||| |||| | |||||||| | | ||| | || |||| ||| Sbjct 101213 GCAGTAGGCATGGGGGCCAACAACAGGCTGTTCCTCACACCATGTTTAGTAATCTTCTCC 101154 Query 118302 TTGAG-AGCGTCCCAGTCGTAGTTGAGCTTT-GTCTCCCCCTGCCACATATCAAACTGGA 118359 || || ||| ||| |||| || | || | | | || || |||||| || | || | Sbjct 101153 TTAAGCAGCTTCC-AGTCCCAGA-GCGCAGTCGGCACCTTCTCCCACATGTCGTATTGCA 101096 Query 118360 GGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCA 118419 | || || | | |||| || || |||||||||| || || || || || | Sbjct 101095 GAATGCCCTTACTCACTGGAGAACCTGGGTATGTCTCATAAGGCCCGTCTTTTTCTGCTA 101036 Query 118420 ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTG 118479 | ||| |||| ||||| ||||| |||| || ||||| ||||| || | |||| Sbjct 101035 ACTCGCAGCTTGCCTCCAGGGCGGCGTAGTATATTGTCTCAAAGATCTGGATGTTCAGCA 100976 Query 118480 CCTTGGCCTCGTCGGAAT--CAAACGCGAGTCGGCACAA-AATAAATACATCCGCGAGAC 118536 || ||| || ||| | |||| | || ||| | ||| || |||| ||||||| Sbjct 100975 GCTGGGCTTCA--GGACTTTCAAATG-GATAACGCATGAGAATGAAGGCATCTGCGAGAC 100919 Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---A 118593 | || || || | || ||||| | || | | | || || ||| ||| || | Sbjct 100918 CCTGCACTCCAATTCCGATTGGCCTGTGGCGCTTGTTCGAGTTCT---CGGCTTCAGGGA 100862 Query 118594 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 118653 | || || | || | || || | | | || || ||| | | || || |||| Sbjct 100861 CTGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACAG 100802 Query 118654 CATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 118713 |||||||| | | ||||| | || ||| | | |||||| | ||| || | Sbjct 100801 AGGCAAGCTTTTTGAAGTCAAAGGTCCGT---TCTGGAGTAACATACATGTTAAGAGCAA 100745 Query 118714 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGC 118773 | || |||| ||||| || | |||||| || || ||||| | ||| || |||| Sbjct 100744 TAGAAGCCAAGTTACAGACGGCTACCTCATCTTTGCTTGTATACTCCACAATCTCAGTGC 100685 Query 118774 ACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 118833 ||||||| | || || |||||||| |||| ||||| ||| ||||||| |||| Sbjct 100684 ACAAGTTACTGCATTTGATAGTGCCCAAATTCTGCTGATTACTCTTCCTGTTACAGGCAT 100625 Query 118834 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACT 118875 | ||||| | |||||| || || || || || || || |||| Sbjct 100624 CTTTGTACAACATGTAAGGAGTTCCTGTTTCAGTCTGAGACT 100583 >seq9943 Length=499256 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | ||||||||| || |||||| ||| || ||||| || || || |||| Sbjct 292078 CCTCGTCTCTGCTGATGAGTTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 292019 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 | | ||||||||| || || || |||||||||||||||||||| ||| ||||||| Sbjct 292018 TGAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATCCCCTCGACAGCGGCGAACG 291959 Query 130155 CAAAGAGACGCTC 130167 | | | |||||| Sbjct 291958 CCACCACACGCTC 291946 >seq11714 Length=3826745 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || || ||| | ||||| ||||||| | | |||||||| || | ||| ||||| |||||| Sbjct 1500855 TAAATGTTGCTGGTGTAAGGCTCAATGGATTCATTGTTGCCAAGGATCTGGGCAGTGGAG 1500914 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 ||||||||||| || |||| ||| |||||||| Sbjct 1500915 GCTGTGGGCATAGGGGCCAGGAGGAGGCTGTT 1500946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618306720087200